RLG00000026766

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000150
Physical Location & Seq
Reverse (-)
5748157 .. 5749464
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026766

Sequence Viewer

Length: 1188 bp
ATGGAGATGATAGAGTACAATCGAGAAGCTGAATCCATATTTGTTATGGCGGAGTTCGATCAAGATGATTCCTACACTGGTGGTATATACGAAATCAAACTTGACCAACTTCAACAACTTGAGGGTGGTAAATCTGTGGGCGGACCTGACACTGACCCTTTAACTCTTCCAATCCTCGAACCTGTATTAAAGTTCTTTGATGAGAGTTGGAAGATGGAGGGGCTTTGTTTAATTGATGGTGCCAGATTTGGCAGCCTCTCCAAGTTATATATTATGGTAAATCAAATACCATGGGATTATCTCAAGCCTGTCACTCCCAAGCATGCATTTTTCTTCGACATATCAAGCTTAGACTCAAAACTGCATCAGGTTTCTCCACCCAAAACAAGTAAGGAGTATTGTCTTGTCATATCGGCATATGGAATGCTGTACTATCTTGCAGAACCAATGTGCTTTCCTCAGATTCAAGAACCATCATTCGAGCGATATGATCCGTCAAGTGATTCATGGGAGTCCATGCCTCCTTTTCCAGATTATTCTCTGGATCAGGAACAGACCGAGATGACCGGTTATGCCGTTTGTTATGGATATATACTGTTGTCCATGAGAACTGAGAAGGGATATGAAGCGGCGGCTTTTCATATTCGTAGCAGAACATGGCACAAGGTTAAAATTAATGAGGATGGTGATATTGCCAAGCGTAGACATTTTCTAGGCACCCCATTGTCTTTGATATTAATGGCCAAGTATCATCCGCCGTGCCTGCTAATAGGGCATAGAACTCAGAATTTAGTTCATTTAGGGCGGCGGTACTTTTGTGTTGTACAGACTGGTCAGAACAATGATTCTTTTGAGTATCAGTATCTATGTGCGACGACCTTTAGAATTGTCGGTGAAGGGCAAGAAATGAAAATCGAGACTGTTCGGTCATCTATTTTTCGCATAGCGATTGAAGGTAATCATGAATTTGAAGTTAAGTTTAGCTTTACGCCTGATTATAAAGGCATTGAACCGGAAGAAGAAGAGTGTAGCGCAACTAATGCATTGCCTGAAAGTGAAAGTGCTGCATGGACTTCGAAGGTGGAAGAAGACTTCTTTTCCTTTCCATCTGGTCCTAAACTCTTCCCAACTGGTCTTAATCTGGAAATATTGGAGGCATTCAGAACCAAAAAAGAAGACAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

45.36

Weight (kDa)

4.91

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AasI GACNNNNNNGTC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 239, 716
AccI GTMKAC 1 cut(s) 703
AciI CCGC 7 cut(s) 50, 141, 629, 632, 755, 805, 808
AclWI GGATC 2 cut(s) 485, 552
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 2 cut(s) 787, 965
AfaI GTAC 4 cut(s) 17, 431, 812, 825
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 5 cut(s) 113, 467, 953, 971, 1010
AluBI AGCT 3 cut(s) 29, 348, 984
AluI AGCT 3 cut(s) 29, 348, 984
Alw26I GTCTC 1 cut(s) 911
AlwI GGATC 2 cut(s) 485, 552
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 2 cut(s) 252, 1064
ApoI RAATTY 2 cut(s) 787, 965
AseI ATTAAT 2 cut(s) 675, 737
AsiGI ACCGGT 1 cut(s) 566
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 2 cut(s) 143, 1112
AsuHPI GGTGA 2 cut(s) 698, 905
AsuII TTCGAA 1 cut(s) 1076
AvaII GGWCC 2 cut(s) 143, 1112
BaeI ACNNNNGTAYC 2 cut(s) 802, 835
BalI TGGCCA 1 cut(s) 743
BanI GGYRCC 2 cut(s) 239, 716
BbsI GAAGAC 2 cut(s) 1095, 1182
BbvI GCAGC 2 cut(s) 264, 1051
BccI CCATC 5 cut(s) 208, 230, 481, 677, 1114
BceAI ACGGC 2 cut(s) 560, 742
BcgI CGANNNNNNTGC 2 cut(s) 1056, 1090
BcoDI GTCTC 1 cut(s) 911
BfaI CTAG 1 cut(s) 713
BisI GCNGC 5 cut(s) 253, 630, 633, 806, 1065
BlsI GCNGC 5 cut(s) 254, 631, 634, 807, 1066
Bme18I GGWCC 2 cut(s) 143, 1112
BmgT120I GGNCC 2 cut(s) 143, 1112
BmiI GGNNCC 2 cut(s) 241, 718
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 1095, 1182
Bpu14I TTCGAA 1 cut(s) 1076
BpuEI CTTGAG 2 cut(s) 140, 287
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 2 cut(s) 566, 1012
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 3 cut(s) 82, 835, 1135
Bse3DI GCAATG 1 cut(s) 1043
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 688, 751
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 3 cut(s) 473, 603, 797
BseNI ACTGG 3 cut(s) 82, 835, 1135
BseXI GCAGC 2 cut(s) 264, 1051
BshFI GGCC 1 cut(s) 743
BshNI GGYRCC 2 cut(s) 239, 716
BshTI ACCGGT 1 cut(s) 566
BsiSI CCGG 2 cut(s) 567, 1013
BsmAI GTCTC 1 cut(s) 911
BsmI GAATGC 2 cut(s) 429, 1157
BsnI GGCC 1 cut(s) 743
Bsp119I TTCGAA 1 cut(s) 1076
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 3 cut(s) 58, 490, 544
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 7 cut(s) 50, 141, 629, 632, 755, 805, 808
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 3 cut(s) 472, 604, 796
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 2 cut(s) 241, 718
BspPI GGATC 2 cut(s) 485, 552
BspT104I TTCGAA 1 cut(s) 1076
BspT107I GGYRCC 2 cut(s) 239, 716
BsrDI GCAATG 1 cut(s) 1043
BsrFI RCCGGY 1 cut(s) 566
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 3 cut(s) 82, 835, 1135
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 3 cut(s) 58, 490, 544
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 597, 922
Bst6I CTCTTC 3 cut(s) 171, 1017, 1127
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 823
BstBI TTCGAA 1 cut(s) 1076
BstC8I GCNNGC 2 cut(s) 324, 764
BstDEI CTNAG 4 cut(s) 349, 459, 612, 783
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 688, 751
BstHHI GCGC 1 cut(s) 1034
BstKTI GATC 3 cut(s) 61, 493, 547
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 3 cut(s) 58, 490, 544
BstMWI GCNNNNNNNGC 3 cut(s) 763, 772, 1040
BstNSI RCATGY 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 264, 1051
BstV2I GAAGAC 2 cut(s) 1095, 1182
BsuRI GGCC 1 cut(s) 743
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 688, 751
BtsIMutI CAGTG 2 cut(s) 75, 150
Cac8I GCNNGC 2 cut(s) 324, 764
CciI TCATGA 1 cut(s) 961
CfoI GCGC 1 cut(s) 1034
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 143, 1112
Csp6I GTAC 4 cut(s) 16, 430, 811, 824
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 8 cut(s) 291, 323, 507, 517, 604, 657, 962, 1068
CviJI RGCY 8 cut(s) 29, 223, 255, 307, 348, 635, 743, 984
CviKI_1 RGCY 8 cut(s) 29, 223, 255, 307, 348, 635, 743, 984
CviQI GTAC 4 cut(s) 16, 430, 811, 824
DdeI CTNAG 4 cut(s) 349, 459, 612, 783
DpnI GATC 3 cut(s) 60, 492, 546
DpnII GATC 3 cut(s) 58, 490, 544
DrdI GACNNNNNNGTC 1 cut(s) 925
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 3 cut(s) 171, 1017, 1127
EarI CTCTTC 3 cut(s) 171, 1017, 1127
EciI GGCGGA 3 cut(s) 65, 156, 744
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 143, 1112
EcoT14I CCWWGG 1 cut(s) 290
EcoT22I ATGCAT 2 cut(s) 328, 1045
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 8 cut(s) 294, 326, 510, 520, 607, 660, 965, 1071
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FatI CATG 8 cut(s) 290, 322, 506, 516, 603, 656, 961, 1067
FauNDI CATATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 703
Fnu4HI GCNGC 5 cut(s) 253, 630, 633, 806, 1065
FokI GGATG 2 cut(s) 695, 738
Fsp4HI GCNGC 5 cut(s) 253, 630, 633, 806, 1065
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 1033
GluI GCNGC 5 cut(s) 253, 630, 633, 806, 1065
HaeIII GGCC 1 cut(s) 743
HapII CCGG 2 cut(s) 567, 1013
HhaI GCGC 1 cut(s) 1034
Hin1II CATG 8 cut(s) 294, 326, 510, 520, 607, 660, 965, 1071
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 7 cut(s) 32, 68, 353, 463, 503, 512, 845
HpaII CCGG 2 cut(s) 567, 1013
HphI GGTGA 2 cut(s) 698, 905
Hpy166II GTNNAC 1 cut(s) 704
Hpy188I TCNGA 4 cut(s) 462, 786, 837, 1163
Hpy188III TCNNGA 9 cut(s) 23, 62, 467, 530, 542, 548, 916, 962, 1142
Hpy8I GTNNAC 1 cut(s) 704
Hpy99I CGWCG 1 cut(s) 877
HpyAV CCTTC 4 cut(s) 610, 890, 947, 1072
HpyCH4III ACNGT 2 cut(s) 597, 922
HpyCH4V TGCA 5 cut(s) 326, 364, 440, 1043, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 763, 772, 1040
HpyF3I CTNAG 4 cut(s) 349, 459, 612, 783
Hsp92II CATG 8 cut(s) 294, 326, 510, 520, 607, 660, 965, 1071
HspAI GCGC 1 cut(s) 1032
Kzo9I GATC 3 cut(s) 58, 490, 544
Lsp1109I GCAGC 2 cut(s) 264, 1051
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 713
MaeIII GTNAC 1 cut(s) 310
MalI GATC 3 cut(s) 60, 492, 546
MboI GATC 3 cut(s) 58, 490, 544
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 5 cut(s) 231, 672, 787, 885, 965
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 2 cut(s) 347, 521
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 8 cut(s) 115, 185, 211, 266, 468, 531, 673, 1147
Mox20I TGGCCA 1 cut(s) 743
Mph1103I ATGCAT 2 cut(s) 328, 1045
MscI TGGCCA 1 cut(s) 743
MseI TTAA 8 cut(s) 161, 188, 230, 669, 675, 737, 975, 1137
Msp20I TGGCCA 1 cut(s) 743
MspI CCGG 2 cut(s) 567, 1013
Mva1269I GAATGC 2 cut(s) 429, 1157
MwoI GCNNNNNNNGC 3 cut(s) 763, 772, 1040
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 418
NdeII GATC 3 cut(s) 58, 490, 544
NlaIII CATG 8 cut(s) 294, 326, 510, 520, 607, 660, 965, 1071
NlaIV GGNNCC 2 cut(s) 241, 718
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 2 cut(s) 328, 1045
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 1076
PaeI GCATGC 1 cut(s) 326
PagI TCATGA 1 cut(s) 961
PctI GAATGC 2 cut(s) 429, 1157
PfeI GAWTC 5 cut(s) 32, 68, 463, 503, 845
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 5 cut(s) 254, 631, 634, 807, 1066
PleI GAGTC 2 cut(s) 347, 520
PpsI GAGTC 2 cut(s) 347, 520
PshBI ATTAAT 2 cut(s) 675, 737
PsiI TTATAA 1 cut(s) 999
PspN4I GGNNCC 2 cut(s) 241, 718
PspPI GGNCC 2 cut(s) 143, 1112
RsaI GTAC 4 cut(s) 17, 431, 812, 825
RsaNI GTAC 4 cut(s) 16, 430, 811, 824
SaqAI TTAA 8 cut(s) 161, 188, 230, 669, 675, 737, 975, 1137
SatI GCNGC 5 cut(s) 253, 630, 633, 806, 1065
Sau3AI GATC 3 cut(s) 58, 490, 544
Sau96I GGNCC 2 cut(s) 143, 1112
SchI GAGTC 2 cut(s) 347, 521
SfaNI GCATC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 1076
SinI GGWCC 2 cut(s) 143, 1112
SmlI CTYRAG 2 cut(s) 119, 302
SmoI CTYRAG 2 cut(s) 119, 302
SphI GCATGC 1 cut(s) 326
Sse9I AATT 5 cut(s) 231, 672, 787, 885, 965
SsiI CCGC 7 cut(s) 50, 141, 629, 632, 755, 805, 808
SspI AATATT 1 cut(s) 1149
SspMI CTAG 1 cut(s) 713
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 597, 922
TaqI TCGA 7 cut(s) 22, 57, 177, 336, 480, 915, 1076
TaqII GACCGA 2 cut(s) 572, 915
TasI AATT 5 cut(s) 231, 672, 787, 885, 965
TatI WGTACW 3 cut(s) 15, 429, 823
TauI GCSGC 3 cut(s) 632, 635, 808
TfiI GAWTC 5 cut(s) 32, 68, 463, 503, 845
Tru1I TTAA 8 cut(s) 161, 188, 230, 669, 675, 737, 975, 1137
Tru9I TTAA 8 cut(s) 161, 188, 230, 669, 675, 737, 975, 1137
TscAI CASTG 2 cut(s) 82, 157
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 252, 1064
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 6 cut(s) 495, 629, 639, 785, 923, 978
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 2 cut(s) 82, 157
VpaK11BI GGWCC 2 cut(s) 143, 1112
VspI ATTAAT 2 cut(s) 675, 737
XapI RAATTY 2 cut(s) 787, 965
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 703
XspI CTAG 1 cut(s) 713
Zsp2I ATGCAT 2 cut(s) 328, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.