Rh7BG283700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000150
Physical Location & Seq
Reverse (-)
26619271 .. 26620299
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG283700.1

Sequence Viewer

Length: 1029 bp
ATGAAGATACTGAAGCACGCAGAAGCAAGCTCTGTCTTTGTAGTGGTGACTCCTTTTGAGGGCACCTGCTTTGGTGCATTATTTGAAGTAAAATTAGATGGACAAGGTGAAGAAGGTTCAGCAACTCATGAAACCCAACCAGTACTTGAAACTGTATCACGGTTCACTACAAAGGATTTGGGTCGGGGAATGTGGAAATTTTGTACCTTGGGTGCCAAGTTATATATTTTGCCAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTCCCCAAATGCAGTGGACATATTTTCGACATCAAGACTAGGAAAGTGGTGTCATCATTGAAACCCCCAGCTCCCAAATGGTTTAGAACTCATGTGTCTGCGTATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATGTGATGTACCAGAGCCGTCTTTCGAGCGGTGTGACCCTATCACTCAGTCTTGGCAGAAGCTGTGCTCTTTTCCATATTCAGAGGAATATGGTAATACAGAGATACAGGGCTATGCCGTTTGTGATGAAATCTTATTGTTTAGTATATGTAGCTGTAAGGAAAACTATGATGCACTGTGGGCTTATGATGTCATTCAAAATAAGTGGTGTCCAGTCCAAGTTGAGAATATAGGCTGCTATTTCCGAAGCAGGGCCGTGGTTGTGGACAAGACTATCTATGCCTTATCCATTTTGCACATGGCTGTTGTGGCATTCTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTACAGTTGGATTTTCCACAGGTTATAGACTGGAGAAGTGATCAGCATTTGGTTCATTTGGGTAACCTAGTCTTTTATCTGGTCCAGAGTGGCTTCGACGACGAAGTTGATGTTCGTCAACCTCTTTCTATCACCAAATTTCAGATTGTGGGAGGAAGCGAAATCAATTTCATAAGTTCAACGCTTTGTGAGGTGGATATCGAGGATACTGGGCCATTCCGTGTTCAATTATGCTTAACGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.41

Weight (kDa)

4.89

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 62, 212
AccB7I CCANNNNNTGG 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 439
AciI CCGC 1 cut(s) 439
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 3 cut(s) 197, 381, 920
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 3 cut(s) 144, 205, 420
AfiI CCNNNNNNNGG 4 cut(s) 59, 239, 661, 748
AgsI TTSAA 7 cut(s) 86, 149, 331, 608, 771, 963, 1010
AluBI AGCT 5 cut(s) 30, 341, 472, 564, 765
AluI AGCT 5 cut(s) 30, 341, 472, 564, 765
Alw21I GWGCWC 1 cut(s) 479
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 663, 995
ApeKI GCWGC 1 cut(s) 645
ApoI RAATTY 3 cut(s) 197, 381, 920
AspS9I GGNCC 4 cut(s) 242, 663, 865, 995
AsuHPI GGTGA 3 cut(s) 58, 119, 907
AvaII GGWCC 2 cut(s) 242, 865
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 62, 212
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 632
BccI CCATC 2 cut(s) 92, 230
BceAI ACGGC 3 cut(s) 412, 512, 650
BciVI GTATCC 1 cut(s) 982
BclI TGATCA 1 cut(s) 823
BfaI CTAG 2 cut(s) 309, 851
BfuAI ACCTGC 1 cut(s) 74
BfuI GTATCC 1 cut(s) 982
BisI GCNGC 1 cut(s) 646
BlsI GCNGC 1 cut(s) 647
BmcAI AGTACT 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 242, 865
BmgT120I GGNCC 4 cut(s) 242, 663, 865, 995
BmiI GGNNCC 2 cut(s) 64, 214
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 1 cut(s) 571
BmuI ACTGGG 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 835
BsaJI CCNNGG 2 cut(s) 207, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 239, 661, 748
Bse1I ACTGG 4 cut(s) 140, 623, 818, 997
BseDI CCNNGG 2 cut(s) 207, 666
BseLI CCNNNNNNNGG 4 cut(s) 59, 239, 661, 748
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 4 cut(s) 140, 623, 818, 997
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 665, 997
BshNI GGYRCC 2 cut(s) 62, 212
BsiHKAI GWGCWC 1 cut(s) 479
BslI CCNNNNNNNGG 4 cut(s) 59, 239, 661, 748
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 665, 997
Bsp1286I GDGCHC 2 cut(s) 65, 479
Bsp143I GATC 2 cut(s) 397, 823
BspACI CCGC 1 cut(s) 439
BspANI GGCC 2 cut(s) 665, 997
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 64, 214
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 62, 212
BsrBI CCGCTC 1 cut(s) 439
BsrI ACTGG 4 cut(s) 140, 623, 818, 997
BssECI CCNNGG 2 cut(s) 207, 666
BssMI GATC 2 cut(s) 397, 823
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 4 cut(s) 154, 162, 588, 789
BstC8I GCNNGC 2 cut(s) 18, 28
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 666
BstEII GGTNACC 1 cut(s) 845
BstKTI GATC 2 cut(s) 400, 826
BstMBI GATC 2 cut(s) 397, 823
BstMWI GCNNNNNNNGC 2 cut(s) 590, 719
BstPI GGTNACC 1 cut(s) 845
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 2 cut(s) 665, 997
BtgI CCRYGG 1 cut(s) 666
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 289, 584
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 18, 28
CaiI CAGNNNCTG 1 cut(s) 472
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 242, 663, 865, 995
Csp6I GTAC 3 cut(s) 143, 204, 419
CspCI CAANNNNNGTGG 4 cut(s) 265, 300, 596, 631
CviAII CATG 5 cut(s) 128, 259, 362, 411, 709
CviQI GTAC 3 cut(s) 143, 204, 419
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 399, 825
DpnII GATC 2 cut(s) 397, 823
Eco130I CCWWGG 1 cut(s) 207
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 242, 865
Eco57I CTGAAG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 845
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 5 cut(s) 131, 262, 365, 414, 712
FatI CATG 5 cut(s) 127, 258, 361, 410, 708
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 646
FspBI CTAG 2 cut(s) 309, 851
GluI GCNGC 1 cut(s) 646
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 2 cut(s) 665, 997
Hin1II CATG 5 cut(s) 131, 262, 365, 414, 712
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HinfI GANTC 1 cut(s) 49
HphI GGTGA 3 cut(s) 58, 119, 907
Hpy166II GTNNAC 4 cut(s) 165, 287, 676, 902
Hpy188I TCNGA 4 cut(s) 397, 493, 656, 927
Hpy188III TCNNGA 4 cut(s) 128, 245, 304, 868
Hpy8I GTNNAC 4 cut(s) 165, 287, 676, 902
Hpy99I CGWCG 2 cut(s) 884, 887
HpyAV CCTTC 2 cut(s) 107, 746
HpyCH4III ACNGT 4 cut(s) 154, 162, 588, 789
HpyCH4V TGCA 4 cut(s) 77, 282, 584, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 719
HpyF3I CTNAG 1 cut(s) 456
Hsp92II CATG 5 cut(s) 131, 262, 365, 414, 712
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 2 cut(s) 397, 823
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 309, 851
MaeIII GTNAC 4 cut(s) 46, 443, 783, 845
MalI GATC 2 cut(s) 399, 825
MbiI CCGCTC 1 cut(s) 439
MboI GATC 2 cut(s) 397, 823
MboII GAAGA 2 cut(s) 16, 122
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 2 cut(s) 65, 479
MluCI AATT 6 cut(s) 92, 197, 381, 920, 949, 1010
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 7 cut(s) 52, 487, 742, 915, 929, 967, 979
MseI TTAA 2 cut(s) 1019, 1027
MslI CAYNNNNRTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 722
MwoI GCNNNNNNNGC 2 cut(s) 590, 719
NdeII GATC 2 cut(s) 397, 823
NlaIII CATG 5 cut(s) 131, 262, 365, 414, 712
NlaIV GGNNCC 2 cut(s) 64, 214
NmuCI GTSAC 2 cut(s) 46, 443
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 74
PctI GAATGC 1 cut(s) 722
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 1 cut(s) 647
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 64, 214
PspPI GGNCC 4 cut(s) 242, 663, 865, 995
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 3 cut(s) 144, 205, 420
RsaNI GTAC 3 cut(s) 143, 204, 419
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 1019, 1027
SatI GCNGC 1 cut(s) 646
Sau3AI GATC 2 cut(s) 397, 823
Sau96I GGNCC 4 cut(s) 242, 663, 865, 995
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 1 cut(s) 43
SduI GDGCHC 2 cut(s) 65, 479
SfaNI GCATC 1 cut(s) 571
SinI GGWCC 2 cut(s) 242, 865
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 6 cut(s) 92, 197, 381, 920, 949, 1010
SsiI CCGC 1 cut(s) 439
SspMI CTAG 2 cut(s) 309, 851
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 154, 162, 588, 789
TaqI TCGA 4 cut(s) 297, 435, 879, 984
TasI AATT 6 cut(s) 92, 197, 381, 920, 949, 1010
TatI WGTACW 1 cut(s) 142
Tru1I TTAA 2 cut(s) 1019, 1027
Tru9I TTAA 2 cut(s) 1019, 1027
TscAI CASTG 2 cut(s) 289, 591
TseFI GTSAC 2 cut(s) 46, 443
TseI GCWGC 1 cut(s) 645
Tsp45I GTSAC 2 cut(s) 46, 443
TspDTI ATGAA 5 cut(s) 17, 144, 552, 827, 943
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 2 cut(s) 289, 591
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 242, 865
XapI RAATTY 3 cut(s) 197, 381, 920
XcmI CCANNNNNNNNNTGG 2 cut(s) 345, 706
XspI CTAG 2 cut(s) 309, 851
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.