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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 450 |
| Acc36I | ACCTGC | 1 cut(s) | 450 |
| AccI | GTMKAC | 1 cut(s) | 312 |
| AcoI | YGGCCR | 1 cut(s) | 405 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 18, 137 |
| AgsI | TTSAA | 2 cut(s) | 251, 374 |
| Ama87I | CYCGRG | 1 cut(s) | 54 |
| AoxI | GGCC | 3 cut(s) | 28, 199, 405 |
| ApeKI | GCWGC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 2 cut(s) | 199, 285 |
| AsuHPI | GGTGA | 1 cut(s) | 292 |
| AvaI | CYCGRG | 1 cut(s) | 54 |
| AvaII | GGWCC | 1 cut(s) | 285 |
| BbsI | GAAGAC | 1 cut(s) | 441 |
| BbvI | GCAGC | 1 cut(s) | 73 |
| BccI | CCATC | 3 cut(s) | 59, 98, 133 |
| BfuAI | ACCTGC | 1 cut(s) | 450 |
| BisI | GCNGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 1 cut(s) | 88 |
| Bme18I | GGWCC | 1 cut(s) | 285 |
| BmeT110I | CYCGRG | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 2 cut(s) | 199, 285 |
| BmsI | GCATC | 1 cut(s) | 232 |
| BpiI | GAAGAC | 1 cut(s) | 441 |
| BsaAI | YACGTR | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 261, 291 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 18, 137 |
| BseGI | GGATG | 3 cut(s) | 118, 125, 147 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 18, 137 |
| BseRI | GAGGAG | 1 cut(s) | 282 |
| BseXI | GCAGC | 1 cut(s) | 73 |
| BshFI | GGCC | 3 cut(s) | 30, 201, 407 |
| BsiHKCI | CYCGRG | 1 cut(s) | 54 |
| BsiSI | CCGG | 2 cut(s) | 202, 404 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 18, 137 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsnI | GGCC | 3 cut(s) | 30, 201, 407 |
| BsoBI | CYCGRG | 1 cut(s) | 54 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspANI | GGCC | 3 cut(s) | 30, 201, 407 |
| BspMI | ACCTGC | 1 cut(s) | 450 |
| BssMI | GATC | 1 cut(s) | 3 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 1 cut(s) | 362 |
| Bst6I | CTCTTC | 1 cut(s) | 375 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstBAI | YACGTR | 1 cut(s) | 137 |
| BstF5I | GGATG | 3 cut(s) | 118, 125, 147 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstV1I | GCAGC | 1 cut(s) | 73 |
| BstV2I | GAAGAC | 1 cut(s) | 441 |
| BsuRI | GGCC | 3 cut(s) | 30, 201, 407 |
| BtgZI | GCGATG | 1 cut(s) | 328 |
| BtsCI | GGATG | 3 cut(s) | 118, 125, 147 |
| BveI | ACCTGC | 1 cut(s) | 450 |
| Cfr13I | GGNCC | 2 cut(s) | 199, 285 |
| CseI | GACGC | 2 cut(s) | 11, 181 |
| CviJI | RGCY | 4 cut(s) | 30, 41, 201, 407 |
| CviKI_1 | RGCY | 4 cut(s) | 30, 41, 201, 407 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| EaeI | YGGCCR | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 375 |
| EarI | CTCTTC | 1 cut(s) | 375 |
| Eco47I | GGWCC | 1 cut(s) | 285 |
| Eco88I | CYCGRG | 1 cut(s) | 54 |
| EcoO109I | RGGNCCY | 1 cut(s) | 285 |
| FaiI | YATR | 4 cut(s) | 9, 38, 231, 233 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FblI | GTMKAC | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 1 cut(s) | 87 |
| FokI | GGATG | 3 cut(s) | 105, 112, 154 |
| Fsp4HI | GCNGC | 1 cut(s) | 87 |
| GluI | GCNGC | 1 cut(s) | 87 |
| HaeIII | GGCC | 3 cut(s) | 30, 201, 407 |
| HapII | CCGG | 2 cut(s) | 202, 404 |
| HgaI | GACGC | 2 cut(s) | 11, 181 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| HincII | GTYRAC | 2 cut(s) | 313, 340 |
| HindII | GTYRAC | 2 cut(s) | 313, 340 |
| HinfI | GANTC | 1 cut(s) | 59 |
| HpaII | CCGG | 2 cut(s) | 202, 404 |
| HphI | GGTGA | 1 cut(s) | 292 |
| Hpy166II | GTNNAC | 2 cut(s) | 313, 340 |
| Hpy188I | TCNGA | 2 cut(s) | 64, 396 |
| Hpy188III | TCNNGA | 1 cut(s) | 54 |
| Hpy8I | GTNNAC | 2 cut(s) | 313, 340 |
| HpyAV | CCTTC | 3 cut(s) | 52, 266, 379 |
| HpyCH4III | ACNGT | 1 cut(s) | 362 |
| HpyCH4IV | ACGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 2 cut(s) | 100, 459 |
| HpySE526I | ACGT | 1 cut(s) | 136 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 1 cut(s) | 269 |
| LpnPI | CCDG | 5 cut(s) | 215, 369, 390, 417, 445 |
| Lsp1109I | GCAGC | 1 cut(s) | 73 |
| LweI | GCATC | 1 cut(s) | 232 |
| MaeII | ACGT | 1 cut(s) | 136 |
| MaeIII | GTNAC | 1 cut(s) | 132 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 3 cut(s) | 392, 446, 464 |
| MluCI | AATT | 2 cut(s) | 70, 101 |
| MnlI | CCTC | 3 cut(s) | 124, 260, 276 |
| MseI | TTAA | 1 cut(s) | 104 |
| MspI | CCGG | 2 cut(s) | 202, 404 |
| NdeII | GATC | 1 cut(s) | 3 |
| PaqCI | CACCTGC | 1 cut(s) | 450 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 1 cut(s) | 88 |
| Ppu21I | YACGTR | 1 cut(s) | 137 |
| PpuMI | RGGWCCY | 1 cut(s) | 285 |
| Psp5II | RGGWCCY | 1 cut(s) | 285 |
| PspPI | GGNCC | 2 cut(s) | 199, 285 |
| PspPPI | RGGWCCY | 1 cut(s) | 285 |
| SalI | GTCGAC | 1 cut(s) | 311 |
| SaqAI | TTAA | 1 cut(s) | 104 |
| SatI | GCNGC | 1 cut(s) | 87 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 2 cut(s) | 199, 285 |
| SetI | ASST | 4 cut(s) | 116, 139, 290, 464 |
| SfaNI | GCATC | 1 cut(s) | 232 |
| SinI | GGWCC | 1 cut(s) | 285 |
| Sse9I | AATT | 2 cut(s) | 70, 101 |
| SspI | AATATT | 1 cut(s) | 212 |
| TaaI | ACNGT | 1 cut(s) | 362 |
| TaiI | ACGT | 1 cut(s) | 139 |
| TaqI | TCGA | 2 cut(s) | 312, 425 |
| TasI | AATT | 2 cut(s) | 70, 101 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| Tru1I | TTAA | 1 cut(s) | 104 |
| Tru9I | TTAA | 1 cut(s) | 104 |
| TseI | GCWGC | 1 cut(s) | 86 |
| TspDTI | ATGAA | 3 cut(s) | 152, 222, 285 |
| VpaK11BI | GGWCC | 1 cut(s) | 285 |
| XmiI | GTMKAC | 1 cut(s) | 312 |