Rroxscaffold_4G00280210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000150
Physical Location & Seq
Reverse (-)
2831852 .. 2834716
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280210.1

Sequence Viewer

Length: 429 bp
ATGAGCAAGAACAAAAATGCGATTGAAAATAGAGGGAATGTGATGCTTAAGATATTAGAAGAGGGTCGTGTTGTTCATGCAACCGAGAAGAAATATGAAGTGGTAGCTTTTCATATTCATAGTAGAACATGGCACAAGGTCAAAATTAGTCCAGAGAATCCTTATTATTATCCTTTCTACGGGATGGTTGTGGTTGTCGGTGACACTATCTATGCCTTGGCACATAGTCTAAATTTGGTTCTAGTATTCTCTTTCCGGTGGGATTCGGATGAGGATGGTGATATTGCCAAGCGTCGACATTTTTTGGGCACTCCATTGTCTTTGGTATTAAAGGACAAGTATCATCCTCCGTGCCTATTAATAGGGTGTAGGACTCATAGGTTAGTTCATTTAGGGAGACGGTACTTCGTGTTGTACGGACAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.54

Weight (kDa)

9.49

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 2 cut(s) 404, 416
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 232
AseI ATTAAT 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 212, 290
BaeGI GKGCMC 1 cut(s) 311
BccI CCATC 2 cut(s) 178, 269
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 242
BfrI CTTAAG 1 cut(s) 47
BmsI GCATC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 4 cut(s) 189, 274, 280, 343
BseLI CCNNNNNNNGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 311
BspTI CTTAAG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 189, 274, 280, 343
BstMAI GTCTC 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 311
BtsCI GGATG 4 cut(s) 189, 274, 280, 343
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 403, 415
CviAII CATG 2 cut(s) 77, 129
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
CviQI GTAC 2 cut(s) 403, 415
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 2 cut(s) 80, 132
FaiI YATR 8 cut(s) 78, 96, 114, 120, 130, 213, 225, 378
FatI CATG 2 cut(s) 76, 128
FblI GTMKAC 1 cut(s) 295
FokI GGATG 4 cut(s) 196, 281, 287, 330
FspBI CTAG 1 cut(s) 242
HapII CCGG 1 cut(s) 256
HgaI GACGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 80, 132
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 3 cut(s) 157, 263, 373
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 212, 290
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4V TGCA 1 cut(s) 80
Hsp92II CATG 2 cut(s) 80, 132
LpnPI CCDG 3 cut(s) 165, 269, 407
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 2 cut(s) 71, 100
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 2 cut(s) 144, 232
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 4 cut(s) 26, 55, 265, 357
MseI TTAA 3 cut(s) 48, 329, 359
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 1 cut(s) 256
NlaIII CATG 2 cut(s) 80, 132
NmuCI GTSAC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 157, 263
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 359
RsaI GTAC 2 cut(s) 404, 416
RsaNI GTAC 2 cut(s) 403, 415
SalI GTCGAC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 48, 329, 359
SchI GAGTC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 311
SetI ASST 4 cut(s) 109, 141, 383, 426
SfaNI GCATC 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 144, 232
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 144, 232
TfiI GAWTC 2 cut(s) 157, 263
Tru1I TTAA 3 cut(s) 48, 329, 359
Tru9I TTAA 3 cut(s) 48, 329, 359
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 65, 101, 107, 111, 377
TspGWI ACGGA 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 47
VspI ATTAAT 1 cut(s) 359
XapI RAATTY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 295
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.