Rh7BG284100

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000150
Physical Location & Seq
Reverse (-)
26691113 .. 26702393
11281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG284100.1

Sequence Viewer

Length: 2460 bp
ATGAAGATGCCAAAGCACGCAGAAGCAAGCTCTGTCTTTGTACTGGTGACTCATTTTGAGGGCACCTGCTTTGGCTCATTATTTGAAGTGAAATTAGATGGACAAGGTAAAGAAGGTTCAGCAACTCATGAAACCCAACCAGTACTTGAAACCGTATCACGATTCACTACAAAGGATTTGGGTCGCGGAATGTGGAAATTTTGTACCTTGGGTGCCAAGTTATATATTTTGCCAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTCCCCAAATGCAGTGGACATATTTTCGACATCAAGACTAGGAAAGTGGTGTCATCATTGAAACCCCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGCATATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATGTGATGTACCAGAGCCGTCTTTTGAGCAGTATGACCCTAGCACTCAGTCTTGGCAGAAGCTGTGCTCTTTTCCATATTCTGAGGAATATGGTAATACAGAGATACAGGGTTATGCTGTTTGTGGTGAAATCTTATTGTTTAGTATATGCGGCTGTAAGGAAAACTATGATGCACTGTGGGCTTATGATGTTATTAAAAATAAGTGGTGTCCAGTCCAAGTTGAGAATCTAGGCTGCTATTTCCGAAGAAGGGCCGTGGTTGTGGACAAGACTATCTATGCCTTATCCATATTGCACATGGTTGCTGTGGCATTCTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTACAGTTGGATTTTCCACAGGATATAGACTGGAGAAGTGATCAGCATTTGGTTCATTTGGGTAACCTGGTCTTTTATCTTGTCCAGAGTGACGAAGTTGATGTTCGCCAACCTCTTTCGATCACCAAATTTAAGATTGTGGGAGGAAGCAAAATCAATATCATAAGTTCAATGCTTTTTGAGGTGGATCTCGGGGATTCTGGGCCATTCCGTGTTCAATTATGCGTCACACCAGAGTGGGAGGATGTCACGCTCATAGAAGAAGAGATTGCTACCTCCGTCAACCTGGCAAAACAAGTTTCCGAGCTGCACCAAGTAATTCCAGTTCCTTACCAAGCTGGAATCACCCCTCTGCCTGCACATGAAGCATGTTCCTCATCTCAGCCACCTGAGCCTTCAGAAGTGGCAGAACAGTTTCAGCATGTTTCCATCCAGCAAGAGGAAGCACCTAGTCAGTCCATTCAACAAGTGTCAGTCTCTAGCAAGTCTATGATGTTCGCTCTTCGCCCTGGTAAGGGTACGACTGGCAAAAGGTTTCTAGTCAAGGCAAACCATTTCTTTGCTGAATTAACAGACAAGGATCTGCACCAATATGATGTTACTATTACACCAGCTGCAGGAGTCACATCACGCAGTGAAAACCGTGCTGTGATGTTTCAGCTAGTGAAACTCTACAGGGACTCCCATCTTTCAAAGCGGCTTCCTGCTTATGATGGGCAGAAGAGCCTGTATACTACTGGGCCTCTTCCTTTCCAGTCAAAGGAGTTTAAAATCACTCTTCTGGATGATGATGGTGAGGGACAGGGACTCCCATCTTTCAAACGGCAGAGGGAGTTCGGAGTTGTGATCAAATTCGCTGCACGTGTTGACCTGCACGATTTAGTTCTCTTTTTGCAAGGGAGGAAAGCTGATGCACCCGAGAAGGCCCTTCAGGTTCTGAACATTGTTATGAGAGAGTTGCCTACTTCTAGGTACTGTCGTGTGGGTCAGTCATTTTATGACCCTGGCTTGGGGAGAAAACTGCCACTTGGTAACGGTTTAGAAAGCTGGCATGGTTTTCACCAGAGAATTCGTCCAACTCAAATGGGGCTATCTTTAAACATTAATATGTCATCGACATTTTTTATTGAGCCATTGCCAGTTATAGAGTTTGTAATCAAGCTACTGGATTGCAATATTCAAGCTAAGCAACTTTCTGATTCTGATCGTGTAAAGATTAAAAAGGCTCTACGTGGAGTGAAGGTTGAAGTTACACACCGCAGAAACATGCGCAGAAAATACCGTATTTCTGGTTTAACGGCCCAGGAAACAAGAGAATTGACTTTTCCTATTGATGAAAGAGGAACAATGAAATCTGTTGTTGAATACTTTCTTGAAACCTACGGTTTTGCCATTCAATATCCATATTTGCCTTGTCTTCAAGTTGGAAATCAACAACGACCGCACTATTTACCCATGGAGGTCTGTAAAATTGTTAAGGGACAAAGGTGCTCAAGGATATTGAATGAGAGACAGAAAATTGCATTGCTCAAGGTGAGTGCTCCGCGCCCTTTTAAAAAGGAACGTGATATTACACAGGATCCAGATCGAACGAGTTCGACTCGTGTGCCAGGTCGCTGTGCCGGTTCTCAAAACATTTCTCGACTTGAAATTCTGCATCAAGCCGAGGGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

819

Amino Acids

92.3

Weight (kDa)

7.95

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 358 - 418 1.8e-09 Glycine-rich region of argonaut
ArgoN PF16486 439 - 578 2.2e-30 N-terminal domain of argonaute
ArgoL1 PF08699 589 - 638 3.3e-15 Argonaute linker 1 domain
PAZ PF02170 663 - 769 3.9e-28 PAZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc16I TGCGCA 1 cut(s) 2054
Acc36I ACCTGC 2 cut(s) 74, 1662
AccB1I GGYRCC 2 cut(s) 62, 212
AccB7I CCANNNNNTGG 1 cut(s) 239
AccI GTMKAC 1 cut(s) 1514
AccII CGCG 2 cut(s) 186, 2329
AciI CCGC 6 cut(s) 186, 561, 1480, 2041, 2225, 2327
AclWI GGATC 5 cut(s) 392, 978, 1371, 2357, 2370
AcsI RAATTY 6 cut(s) 197, 381, 911, 1634, 1851, 2433
AcuI CTGAAG 2 cut(s) 1164, 1697
AcvI CACGTG 1 cut(s) 1646
AdeI CACNNNGTG 1 cut(s) 1418
AfaI GTAC 6 cut(s) 42, 144, 205, 420, 1303, 1757
AflIII ACRYGT 1 cut(s) 1645
AjnI CCWGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
AleI CACNNNNGTG 1 cut(s) 1018
Alw21I GWGCWC 3 cut(s) 479, 2276, 2326
Alw26I GTCTC 2 cut(s) 1264, 2287
AlwI GGATC 5 cut(s) 392, 978, 1371, 2357, 2370
AlwNI CAGNNNCTG 2 cut(s) 472, 1720
Ama87I CYCGRG 2 cut(s) 974, 1700
AoxI GGCC 5 cut(s) 663, 986, 1523, 1707, 2082
ApeKI GCWGC 4 cut(s) 645, 1090, 1397, 1640
ApoI RAATTY 6 cut(s) 197, 381, 911, 1634, 1851, 2433
AseI ATTAAT 1 cut(s) 1887
Asp700I GAANNNNTTC 3 cut(s) 1197, 2151, 2377
AspLEI GCGC 2 cut(s) 2055, 2331
AspS9I GGNCC 6 cut(s) 242, 663, 986, 1523, 1708, 2083
AsuHPI GGTGA 7 cut(s) 58, 548, 898, 1120, 1589, 1835, 2329
AvaI CYCGRG 2 cut(s) 974, 1700
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 1747, 1780
BamHI GGATCC 1 cut(s) 2362
BanI GGYRCC 2 cut(s) 62, 212
BauI CACGAG 1 cut(s) 2385
BbrPI CACGTG 1 cut(s) 1646
BbsI GAAGAC 1 cut(s) 2192
Bbv12I GWGCWC 3 cut(s) 479, 2276, 2326
BbvI GCAGC 4 cut(s) 632, 1077, 1384, 1627
BccI CCATC 7 cut(s) 92, 230, 1220, 1476, 1490, 1568, 1603
BceAI ACGGC 4 cut(s) 412, 650, 1622, 2097
BcgI CGANNNNNNTGC 2 cut(s) 2371, 2405
BciT130I CCWGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
BclI TGATCA 2 cut(s) 823, 1629
BcoDI GTCTC 2 cut(s) 1264, 2287
BfaI CTAG 8 cut(s) 309, 450, 641, 1233, 1263, 1322, 1445, 1752
BfmI CTRYAG 2 cut(s) 1398, 1456
BfuAI ACCTGC 2 cut(s) 74, 1662
BisI GCNGC 6 cut(s) 562, 646, 1091, 1398, 1481, 1641
BlpI GCTNAGC 1 cut(s) 1968
BlsI GCNGC 6 cut(s) 563, 647, 1092, 1399, 1482, 1642
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 2 cut(s) 974, 1700
BmgT120I GGNCC 6 cut(s) 242, 663, 986, 1523, 1708, 2083
BmiI GGNNCC 3 cut(s) 64, 214, 2364
BmrFI CCNGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
BmrI ACTGGG 1 cut(s) 1530
BmsI GCATC 3 cut(s) 571, 1684, 2449
BmuI ACTGGG 1 cut(s) 1530
BpiI GAAGAC 1 cut(s) 2192
BplI GAGNNNNNCTC 2 cut(s) 2368, 2400
BpmI CTGGAG 1 cut(s) 835
Bpu10I CCTNAGC 1 cut(s) 1173
Bpu1102I GCTNAGC 1 cut(s) 1968
BpuEI CTTGAG 2 cut(s) 2260, 2297
BsaAI YACGTR 2 cut(s) 1646, 2015
BsaBI GATNNNNATC 2 cut(s) 1986, 2367
BsaJI CCNNGG 7 cut(s) 207, 666, 1291, 1786, 2085, 2238, 2448
BsaXI ACNNNNNCTCC 6 cut(s) 1448, 1478, 1575, 1605, 2010, 2040
Bse118I RCCGGY 1 cut(s) 2405
Bse3DI GCAATG 2 cut(s) 1916, 2306
Bse8I GATNNNNATC 2 cut(s) 1986, 2367
BseBI CCWGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
BseDI CCNNGG 7 cut(s) 207, 666, 1291, 1786, 2085, 2238, 2448
BseGI GGATG 3 cut(s) 1033, 1212, 1573
BseJI GATNNNNATC 2 cut(s) 1986, 2367
BseMI GCAATG 2 cut(s) 1916, 2306
BseMII CTCAG 4 cut(s) 470, 483, 1164, 1178
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 4 cut(s) 632, 1077, 1384, 1627
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 5 cut(s) 1076, 1125, 1352, 1626, 1640
Bsh1236I CGCG 2 cut(s) 186, 2329
Bsh1285I CGRYCG 1 cut(s) 2225
BshFI GGCC 5 cut(s) 665, 988, 1525, 1709, 2084
BshNI GGYRCC 2 cut(s) 62, 212
BsiEI CGRYCG 1 cut(s) 2225
BsiHKAI GWGCWC 3 cut(s) 479, 2276, 2326
BsiHKCI CYCGRG 2 cut(s) 974, 1700
BsiSI CCGG 1 cut(s) 2406
BslFI GGGAC 4 cut(s) 1475, 1596, 1602, 2277
BsmAI GTCTC 2 cut(s) 1264, 2287
BsmFI GGGAC 4 cut(s) 1475, 1596, 1602, 2277
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 5 cut(s) 665, 988, 1525, 1709, 2084
BsoBI CYCGRG 2 cut(s) 974, 1700
Bsp1286I GDGCHC 4 cut(s) 65, 479, 2276, 2326
Bsp143I GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
Bsp1720I GCTNAGC 1 cut(s) 1968
Bsp19I CCATGG 1 cut(s) 2238
BspACI CCGC 6 cut(s) 186, 561, 1480, 2041, 2225, 2327
BspANI GGCC 5 cut(s) 665, 988, 1525, 1709, 2084
BspCNI CTCAG 4 cut(s) 469, 484, 1165, 1177
BspFNI CGCG 2 cut(s) 186, 2329
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 64, 214, 2364
BspMAI CTGCAG 1 cut(s) 1402
BspMI ACCTGC 2 cut(s) 74, 1662
BspPI GGATC 5 cut(s) 392, 978, 1371, 2357, 2370
BspQI GCTCTTC 2 cut(s) 1290, 1499
BspT107I GGYRCC 2 cut(s) 62, 212
BsrDI GCAATG 2 cut(s) 1916, 2306
BsrFI RCCGGY 1 cut(s) 2405
BssAI RCCGGY 1 cut(s) 2405
BssECI CCNNGG 7 cut(s) 207, 666, 1291, 1786, 2085, 2238, 2448
BssMI GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
BssNAI GTATAC 1 cut(s) 1515
BssSI CACGAG 1 cut(s) 2385
BssT1I CCWWGG 2 cut(s) 207, 2238
Bst1107I GTATAC 1 cut(s) 1515
Bst2BI CACGAG 1 cut(s) 2385
Bst2UI CCWGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
Bst4CI ACNGT 9 cut(s) 154, 588, 789, 1197, 1427, 1760, 1820, 2066, 2168
Bst6I CTCTTC 5 cut(s) 1041, 1290, 1499, 1533, 1566
BstBAI YACGTR 2 cut(s) 1646, 2015
BstC8I GCNNGC 4 cut(s) 18, 28, 1140, 1832
BstDEI CTNAG 5 cut(s) 456, 492, 1164, 1173, 1968
BstDSI CCRYGG 2 cut(s) 666, 2238
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 3 cut(s) 1033, 1212, 1573
BstFNI CGCG 2 cut(s) 186, 2329
BstHHI GCGC 2 cut(s) 2055, 2331
BstKTI GATC 9 cut(s) 400, 826, 906, 973, 1366, 1632, 1990, 2365, 2371
BstMAI GTCTC 2 cut(s) 1264, 2287
BstMBI GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
BstMCI CGRYCG 1 cut(s) 2225
BstMWI GCNNNNNNNGC 3 cut(s) 590, 1148, 1174
BstNI CCWGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
BstNSI RCATGY 3 cut(s) 1155, 1208, 2053
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
BstSFI CTRYAG 2 cut(s) 1398, 1456
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 2 cut(s) 186, 2329
BstV1I GCAGC 4 cut(s) 632, 1077, 1384, 1627
BstV2I GAAGAC 1 cut(s) 2192
BstX2I RGATCY 4 cut(s) 397, 970, 1363, 2362
BstYI RGATCY 4 cut(s) 397, 970, 1363, 2362
BstZ17I GTATAC 1 cut(s) 1515
BsuRI GGCC 5 cut(s) 665, 988, 1525, 1709, 2084
BtgI CCRYGG 2 cut(s) 666, 2238
BtsCI GGATG 3 cut(s) 1033, 1212, 1573
BtsI GCAGTG 2 cut(s) 289, 1423
BtsIMutI CAGTG 3 cut(s) 289, 584, 1423
BveI ACCTGC 2 cut(s) 74, 1662
Cac8I GCNNGC 4 cut(s) 18, 28, 1140, 1832
CaiI CAGNNNCTG 2 cut(s) 472, 1720
CciI TCATGA 1 cut(s) 127
CfoI GCGC 2 cut(s) 2055, 2331
Cfr10I RCCGGY 1 cut(s) 2405
Cfr13I GGNCC 6 cut(s) 242, 663, 986, 1523, 1708, 2083
CseI GACGC 1 cut(s) 997
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 6 cut(s) 41, 143, 204, 419, 1302, 1756
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviQI GTAC 6 cut(s) 41, 143, 204, 419, 1302, 1756
DdeI CTNAG 5 cut(s) 456, 492, 1164, 1173, 1968
DpnI GATC 9 cut(s) 399, 825, 905, 972, 1365, 1631, 1989, 2364, 2370
DpnII GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
DraI TTTAAA 3 cut(s) 1552, 1881, 2338
DraIII CACNNNGTG 1 cut(s) 1418
Eam1104I CTCTTC 5 cut(s) 1041, 1290, 1499, 1533, 1566
EarI CTCTTC 5 cut(s) 1041, 1290, 1499, 1533, 1566
Eco130I CCWWGG 2 cut(s) 207, 2238
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 1164, 1697
Eco72I CACGTG 1 cut(s) 1646
Eco88I CYCGRG 2 cut(s) 974, 1700
Eco91I GGTNACC 1 cut(s) 845
EcoO109I RGGNCCY 1 cut(s) 1708
EcoO65I GGTNACC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 1851
EcoRII CCWGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
EcoT14I CCWWGG 2 cut(s) 207, 2238
ErhI CCWWGG 2 cut(s) 207, 2238
FaqI GGGAC 4 cut(s) 1475, 1596, 1602, 2277
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 823, 1629
FblI GTMKAC 1 cut(s) 1514
Fnu4HI GCNGC 6 cut(s) 562, 646, 1091, 1398, 1481, 1641
FokI GGATG 3 cut(s) 1040, 1199, 1580
Fsp4HI GCNGC 6 cut(s) 562, 646, 1091, 1398, 1481, 1641
FspBI CTAG 8 cut(s) 309, 450, 641, 1233, 1263, 1322, 1445, 1752
FspI TGCGCA 1 cut(s) 2054
GlaI GCGC 2 cut(s) 2054, 2330
GluI GCNGC 6 cut(s) 562, 646, 1091, 1398, 1481, 1641
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 5 cut(s) 665, 988, 1525, 1709, 2084
HapII CCGG 1 cut(s) 2406
HgaI GACGC 1 cut(s) 997
HhaI GCGC 2 cut(s) 2055, 2331
Hin6I GCGC 2 cut(s) 2053, 2329
HinP1I GCGC 2 cut(s) 2053, 2329
HincII GTYRAC 2 cut(s) 1066, 1651
HindII GTYRAC 2 cut(s) 1066, 1651
HpaII CCGG 1 cut(s) 2406
HphI GGTGA 7 cut(s) 58, 548, 898, 1120, 1589, 1835, 2329
Hpy166II GTNNAC 5 cut(s) 287, 676, 1066, 1515, 1651
Hpy188I TCNGA 9 cut(s) 397, 493, 656, 1087, 1183, 1622, 1722, 1981, 1987
Hpy188III TCNNGA 9 cut(s) 128, 159, 245, 304, 868, 1565, 2156, 2366, 2424
Hpy8I GTNNAC 5 cut(s) 287, 676, 1066, 1515, 1651
HpyAV CCTTC 7 cut(s) 107, 654, 746, 1188, 1699, 1721, 2017
HpyCH4III ACNGT 9 cut(s) 154, 588, 789, 1197, 1427, 1760, 1820, 2066, 2168
HpyCH4IV ACGT 3 cut(s) 1645, 2014, 2347
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 1148, 1174
HpyF3I CTNAG 5 cut(s) 456, 492, 1164, 1173, 1968
HpySE526I ACGT 3 cut(s) 1645, 2014, 2347
HspAI GCGC 2 cut(s) 2053, 2329
Ksp22I TGATCA 2 cut(s) 823, 1629
Kzo9I GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
LguI GCTCTTC 2 cut(s) 1290, 1499
LmnI GCTCC 2 cut(s) 346, 2329
Lsp1109I GCAGC 4 cut(s) 632, 1077, 1384, 1627
LweI GCATC 3 cut(s) 571, 1684, 2449
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 8 cut(s) 309, 450, 641, 1233, 1263, 1322, 1445, 1752
MaeII ACGT 3 cut(s) 1645, 2014, 2347
MalI GATC 9 cut(s) 399, 825, 905, 972, 1365, 1631, 1989, 2364, 2370
MboI GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
MboII GAAGA 9 cut(s) 16, 669, 1055, 1058, 1277, 1516, 1520, 1553, 2192
MflI RGATCY 4 cut(s) 397, 970, 1363, 2362
MhlI GDGCHC 4 cut(s) 65, 479, 2276, 2326
MlyI GAGTC 5 cut(s) 43, 1413, 1457, 1584, 2377
MmeI TCCRAC 3 cut(s) 771, 1883, 2188
MroXI GAANNNNTTC 3 cut(s) 1197, 2151, 2377
MslI CAYNNNNRTG 5 cut(s) 263, 1018, 1374, 1730, 1889
MspA1I CMGCKG 1 cut(s) 1397
MspI CCGG 1 cut(s) 2406
MspR9I CCNGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
MvnI CGCG 2 cut(s) 186, 2329
MwoI GCNNNNNNNGC 3 cut(s) 590, 1148, 1174
NcoI CCATGG 1 cut(s) 2238
NdeI CATATG 1 cut(s) 373
NdeII GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
NlaIV GGNNCC 3 cut(s) 64, 214, 2364
NmuCI GTSAC 5 cut(s) 46, 872, 1009, 1030, 1405
NsbI TGCGCA 1 cut(s) 2054
NspI RCATGY 3 cut(s) 1155, 1208, 2053
OliI CACNNNNGTG 1 cut(s) 1018
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 74
PciSI GCTCTTC 2 cut(s) 1290, 1499
PctI GAATGC 1 cut(s) 722
PdmI GAANNNNTTC 3 cut(s) 1197, 2151, 2377
PfeI GAWTC 5 cut(s) 162, 637, 980, 1125, 1982
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 6 cut(s) 563, 647, 1092, 1399, 1482, 1642
PleI GAGTC 5 cut(s) 43, 1412, 1457, 1584, 2377
PmaCI CACGTG 1 cut(s) 1646
PmlI CACGTG 1 cut(s) 1646
PpsI GAGTC 5 cut(s) 43, 1412, 1457, 1584, 2377
Ppu21I YACGTR 2 cut(s) 1646, 2015
PshBI ATTAAT 1 cut(s) 1887
Psp6I CCWGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
PspCI CACGTG 1 cut(s) 1646
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
PspN4I GGNNCC 3 cut(s) 64, 214, 2364
PspPI GGNCC 6 cut(s) 242, 663, 986, 1523, 1708, 2083
PsrI GAACNNNNNNTAC 4 cut(s) 100, 132, 1092, 1124
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 2 cut(s) 472, 1720
PsuI RGATCY 4 cut(s) 397, 970, 1363, 2362
PvuII CAGCTG 1 cut(s) 1397
RsaI GTAC 6 cut(s) 42, 144, 205, 420, 1303, 1757
RsaNI GTAC 6 cut(s) 41, 143, 204, 419, 1302, 1756
RseI CAYNNNNRTG 5 cut(s) 263, 1018, 1374, 1730, 1889
SapI GCTCTTC 2 cut(s) 1290, 1499
SatI GCNGC 6 cut(s) 562, 646, 1091, 1398, 1481, 1641
Sau3AI GATC 9 cut(s) 397, 823, 903, 970, 1363, 1629, 1987, 2362, 2368
Sau96I GGNCC 6 cut(s) 242, 663, 986, 1523, 1708, 2083
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 5 cut(s) 43, 1413, 1457, 1584, 2377
ScrFI CCNGG 6 cut(s) 851, 1070, 1293, 1788, 2087, 2394
SduI GDGCHC 4 cut(s) 65, 479, 2276, 2326
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 3 cut(s) 571, 1684, 2449
SfcI CTRYAG 2 cut(s) 1398, 1456
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 5 cut(s) 263, 1018, 1374, 1730, 1889
SmlI CTYRAG 2 cut(s) 2275, 2312
SmoI CTYRAG 2 cut(s) 2275, 2312
SsiI CCGC 6 cut(s) 186, 561, 1480, 2041, 2225, 2327
SspI AATATT 1 cut(s) 1960
SspMI CTAG 8 cut(s) 309, 450, 641, 1233, 1263, 1322, 1445, 1752
StyD4I CCNGG 6 cut(s) 849, 1068, 1291, 1786, 2085, 2392
StyI CCWWGG 2 cut(s) 207, 2238
TaaI ACNGT 9 cut(s) 154, 588, 789, 1197, 1427, 1760, 1820, 2066, 2168
TaiI ACGT 3 cut(s) 1648, 2017, 2350
TaqI TCGA 6 cut(s) 297, 902, 1898, 2371, 2381, 2425
TatI WGTACW 2 cut(s) 40, 142
TauI GCSGC 2 cut(s) 564, 1483
TfiI GAWTC 5 cut(s) 162, 637, 980, 1125, 1982
TscAI CASTG 3 cut(s) 289, 591, 1423
TseFI GTSAC 5 cut(s) 46, 872, 1009, 1030, 1405
TseI GCWGC 4 cut(s) 645, 1090, 1397, 1640
Tsp45I GTSAC 5 cut(s) 46, 872, 1009, 1030, 1405
TspDTI ATGAA 6 cut(s) 17, 144, 827, 1161, 2133, 2147
TspGWI ACGGA 2 cut(s) 983, 1051
TspRI CASTG 3 cut(s) 289, 591, 1423
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 1 cut(s) 1887
XapI RAATTY 6 cut(s) 197, 381, 911, 1634, 1851, 2433
XceI RCATGY 3 cut(s) 1155, 1208, 2053
XcmI CCANNNNNNNNNTGG 2 cut(s) 345, 706
XmiI GTMKAC 1 cut(s) 1514
XmnI GAANNNNTTC 3 cut(s) 1197, 2151, 2377
XspI CTAG 8 cut(s) 309, 450, 641, 1233, 1263, 1322, 1445, 1752
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.