Rroxscaffold_5G00381760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000150
Physical Location & Seq
Forward (+)
61629534 .. 61630165
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381760.1

Sequence Viewer

Length: 501 bp
ATGTCTATGAAGGGGGAGTCTTCATCAAAGCGAGGAGAAGAAATATCTGTTTTTGTATTGGTGACTACCTTTGAGGGTGACTTCTATGGTGCATTATTTGAAGTAAAACTGGATCAAAGAGGTCAAGTCATGGGTGGATGTGGAGCAACTCACCCCCACTACTTGACCCCTGGTTCGGACATTGGTACATGCAATGATGATGATGAGATCACCACTCCTAAGAAGCCCGACTCTTTGAATGGATACATTTTCGACATTAAGACTAGGGCACTCGTTAAGTTCAGCCCTCCCAATGCATCTAAGTCATCCGGAACTATCCATTTTGCTTCCCATGTGAACCGAGAAGATTCTTTCGAGCGCTATGATATGATCAATGACTCTTGGGAATCACCGAAGCCTTTCCCGTGTTCTAAGGATTGGGCCACAACAAAGATAACCGGTCACGCCATTTATGATGGGTCCATTTTGTTTTCAATATATGGTCGCAGGCAACCGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.47

Weight (kDa)

5.94

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 496
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 2 cut(s) 494, 496
AclWI GGATC 1 cut(s) 120
AfaI GTAC 1 cut(s) 187
AfeI AGCGCT 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 175
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 3 cut(s) 101, 238, 474
AjnI CCWGG 1 cut(s) 169
AlwI GGATC 1 cut(s) 120
Aor13HI TCCGGA 1 cut(s) 308
Aor51HI AGCGCT 1 cut(s) 359
AoxI GGCC 1 cut(s) 420
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 420, 459
AsuHPI GGTGA 5 cut(s) 73, 89, 143, 202, 381
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 236
BclI TGATCA 1 cut(s) 369
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 361
BfuI GTATCC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 420, 459
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 169, 494
BsaWI WCCGGW 2 cut(s) 308, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 169, 494
BseGI GGATG 2 cut(s) 143, 305
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 496
BshFI GGCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 437
BsiSI CCGG 2 cut(s) 309, 438
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 3 cut(s) 112, 207, 369
BspACI CCGC 2 cut(s) 494, 496
BspANI GGCC 1 cut(s) 422
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 169, 494
BssMI GATC 3 cut(s) 112, 207, 369
Bst2UI CCWGG 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 3 cut(s) 219, 300, 411
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 2 cut(s) 143, 305
BstFNI CGCG 1 cut(s) 496
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 3 cut(s) 115, 210, 372
BstMBI GATC 3 cut(s) 112, 207, 369
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 2 cut(s) 143, 305
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 420, 459
Cfr42I CCGCGG 1 cut(s) 497
Csp6I GTAC 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 3 cut(s) 130, 189, 332
CviJI RGCY 4 cut(s) 226, 285, 397, 422
CviKI_1 RGCY 4 cut(s) 226, 285, 397, 422
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 219, 300, 411
DpnI GATC 3 cut(s) 114, 209, 371
DpnII GATC 3 cut(s) 112, 207, 369
Eco47I GGWCC 1 cut(s) 459
Eco47III AGCGCT 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 3 cut(s) 133, 192, 335
FatI CATG 3 cut(s) 129, 188, 331
FbaI TGATCA 1 cut(s) 369
FokI GGATG 2 cut(s) 150, 292
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 309, 438
HhaI GCGC 1 cut(s) 360
Hin1II CATG 3 cut(s) 133, 192, 335
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HinfI GANTC 5 cut(s) 17, 230, 347, 377, 386
HpaII CCGG 2 cut(s) 309, 438
HphI GGTGA 5 cut(s) 73, 89, 143, 202, 381
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 4
HpyCH4V TGCA 3 cut(s) 92, 192, 296
HpyF3I CTNAG 3 cut(s) 219, 300, 411
Hsp92II CATG 3 cut(s) 133, 192, 335
HspAI GCGC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 369
KspI CCGCGG 1 cut(s) 497
Kzo9I GATC 3 cut(s) 112, 207, 369
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 95, 156, 183, 322, 451, 472
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 61, 77, 440
MalI GATC 3 cut(s) 114, 209, 371
MboI GATC 3 cut(s) 112, 207, 369
MboII GAAGA 3 cut(s) 12, 50, 356
MhlI GDGCHC 1 cut(s) 271
MlyI GAGTC 3 cut(s) 26, 224, 371
MnlI CCTC 4 cut(s) 26, 67, 113, 297
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 2 cut(s) 258, 276
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 2 cut(s) 309, 438
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 496
NdeII GATC 3 cut(s) 112, 207, 369
NlaIII CATG 3 cut(s) 133, 192, 335
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 61, 77, 440
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 347, 386
PinAI ACCGGT 1 cut(s) 437
PleI GAGTC 3 cut(s) 25, 224, 371
PpsI GAGTC 3 cut(s) 25, 224, 371
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 420, 459
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SacII CCGCGG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 258, 276
Sau3AI GATC 3 cut(s) 112, 207, 369
Sau96I GGNCC 2 cut(s) 420, 459
SchI GAGTC 3 cut(s) 26, 224, 371
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 271
SetI ASST 2 cut(s) 71, 124
SfaNI GCATC 1 cut(s) 305
Sfr303I CCGCGG 1 cut(s) 497
SgrBI CCGCGG 1 cut(s) 497
SinI GGWCC 1 cut(s) 459
SsiI CCGC 2 cut(s) 494, 496
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 2 cut(s) 252, 354
TfiI GAWTC 2 cut(s) 347, 386
Tru1I TTAA 2 cut(s) 258, 276
Tru9I TTAA 2 cut(s) 258, 276
TseFI GTSAC 3 cut(s) 61, 77, 440
Tsp45I GTSAC 3 cut(s) 61, 77, 440
TspDTI ATGAA 2 cut(s) 12, 23
VpaK11BI GGWCC 1 cut(s) 459
XceI RCATGY 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.