Rroxscaffold_3G00252060

chromosome passenger complex localization to spindle midzone

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
46081459 .. 46086480
5022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252060.1

Sequence Viewer

Length: 1080 bp
ATGTCTATGAAGGGGGAGTCTTCATCAAAGCAGGGAGAAGAAATATCTGTTTTTGTATTGGTGACTACCTTTGAGGGTGACTTCTATGGTGCATTATTTGAAGTAAAACTGGATCAAAGAGGTCAAGTCATGGGTGGATGTGGAGCAACTCAGCCCCCACTACTTGACCCTGTAGCATGTTTCTTTGAAAAGGATTGTAATATTCCTGAATTTTATACCTTCGGTGGTGTTTGCATATGCAACAAGTTATATCTATTGCTCAGTAGTGGTTCAGACATTGGTACATGCAATGATGATGATGAGATCACCACTCCTAAGAAGCCTGACTCTTTGAATGGATACATTTTCGACATTAAGACTAGGGCACTCGTTAAGTTCAGCCCTCCCAAAGCATCTAAGTCATCTGGAACTGTTATACATGCGTATGAGAAAATTTATTTTCTTTTAGATCCATTTTGCTTCCCATGTGAACCAGAAGATTCTTTCGAGCGCTATGATCCGATCAATGACTCTTGGGAATCACTGAAGCCTTTCCCGTATTCTAAGGATTGGGCCACAACAAAGATAACCGGTCACGCCGTTTATGATGGGTCCATTTTGTTTTCAATATATGGCCGCAGGCAACCGGCAGTGATGGCTTATCATGAAAATAGAGATTATTGGGAGCCGGTCAAAGTTGAGGACTTTTGTTGGAGTGGAAAGGCCTTGGTTGTAGGCAATACTATGTATGCCTTATCCTTGCAACCTGGGGAGGTTATAGCATTCTCTGTCATAAGGGATCAAACTGATGAAGGTCATGCTGCCTTTTCTCTTGGCAAGCCATCGCTGTTGTCAGGCATGGAGATTAAGTTCCCACCGAATCCTTCAAGGAGATCACAATACTTGGCTCATTTGGGTGGCCTGGAATTTTGCCTTGTCCAAAGTGGTTTCACGTACAAAGGCAATTATCGGCAACCTCTTTCTATCACCACATTTCGAATTGAGGAGGGAAACAATATCAAGATCTTACATTCCGCAGTTTGTGATGTGGATATTGAGGGCTTTAGTGGTTTCCTTGTTAGCTTCTGCTTCACGCAGTAA

Protein Analysis

359

Amino Acids

40.06

Weight (kDa)

4.98

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 113 - 307 5.9e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 616, 1014
AclWI GGATC 4 cut(s) 120, 443, 491, 786
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 3 cut(s) 209, 432, 905
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 2 cut(s) 283, 935
AfeI AGCGCT 1 cut(s) 491
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 5 cut(s) 101, 188, 334, 606, 867
AjnI CCWGG 2 cut(s) 745, 900
AloI GAACNNNNNNTCC 2 cut(s) 833, 865
AluBI AGCT 1 cut(s) 1062
AluI AGCT 1 cut(s) 1062
AlwI GGATC 4 cut(s) 120, 443, 491, 786
Aor51HI AGCGCT 1 cut(s) 491
AoxI GGCC 4 cut(s) 552, 613, 702, 898
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 3 cut(s) 209, 432, 905
AsiGI ACCGGT 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 552, 591
AsuHPI GGTGA 4 cut(s) 73, 89, 298, 958
AsuII TTCGAA 1 cut(s) 976
AvaII GGWCC 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 787
BccI CCATC 3 cut(s) 581, 628, 829
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 2 cut(s) 747, 902
BciVI GTATCC 1 cut(s) 332
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 493
BfuI GTATCC 1 cut(s) 332
BglII AGATCT 1 cut(s) 1002
BisI GCNGC 2 cut(s) 616, 801
BlsI GCNGC 2 cut(s) 617, 802
Bme1390I CCNGG 2 cut(s) 747, 902
Bme18I GGWCC 1 cut(s) 591
BmgT120I GGNCC 2 cut(s) 552, 591
BmiI GGNNCC 2 cut(s) 592, 666
BmrFI CCNGG 2 cut(s) 747, 902
BmsI GCATC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 976
BsaAI YACGTR 1 cut(s) 933
BsaJI CCNNGG 2 cut(s) 705, 746
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bse118I RCCGGY 3 cut(s) 569, 625, 667
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 747, 902
BseDI CCNNGG 2 cut(s) 705, 746
BseGI GGATG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 164, 274
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 1 cut(s) 787
BshFI GGCC 4 cut(s) 554, 615, 704, 900
BshTI ACCGGT 1 cut(s) 569
BsiSI CCGG 3 cut(s) 570, 626, 668
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 4 cut(s) 554, 615, 704, 900
Bsp119I TTCGAA 1 cut(s) 976
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
BspACI CCGC 2 cut(s) 616, 1014
BspANI GGCC 4 cut(s) 554, 615, 704, 900
BspCNI CTCAG 2 cut(s) 163, 273
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 592, 666
BspPI GGATC 4 cut(s) 120, 443, 491, 786
BspT104I TTCGAA 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 569, 625, 667
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 3 cut(s) 569, 625, 667
BssECI CCNNGG 2 cut(s) 705, 746
BssMI GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 747, 902
Bst4CI ACNGT 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 933
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 2 cut(s) 620, 818
BstDEI CTNAG 5 cut(s) 150, 260, 315, 396, 543
BstF5I GGATG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 8 cut(s) 115, 306, 451, 499, 504, 781, 875, 1005
BstMBI GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 2 cut(s) 747, 902
BstNSI RCATGY 3 cut(s) 180, 288, 422
BstSCI CCNGG 2 cut(s) 745, 900
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 448, 1002
BstYI RGATCY 2 cut(s) 448, 1002
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 4 cut(s) 554, 615, 704, 900
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 521, 636
Cac8I GCNNGC 2 cut(s) 620, 818
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 3 cut(s) 569, 625, 667
Cfr13I GGNCC 2 cut(s) 552, 591
Csp6I GTAC 2 cut(s) 282, 934
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 8 cut(s) 130, 177, 285, 419, 465, 644, 797, 838
CviQI GTAC 2 cut(s) 282, 934
DdeI CTNAG 5 cut(s) 150, 260, 315, 396, 543
DpnI GATC 8 cut(s) 114, 305, 450, 498, 503, 780, 874, 1004
DpnII GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
EaeI YGGCCR 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 705
Eco147I AGGCCT 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 591
Eco47III AGCGCT 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 545
EcoRII CCWGG 2 cut(s) 745, 900
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 8 cut(s) 133, 180, 288, 422, 468, 647, 800, 841
FatI CATG 8 cut(s) 129, 176, 284, 418, 464, 643, 796, 837
FauNDI CATATG 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 616, 801
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 616, 801
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 616, 801
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 4 cut(s) 554, 615, 704, 900
HapII CCGG 3 cut(s) 570, 626, 668
HhaI GCGC 1 cut(s) 492
Hin1II CATG 8 cut(s) 133, 180, 288, 422, 468, 647, 800, 841
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 6 cut(s) 17, 326, 479, 509, 518, 859
HpaII CCGG 3 cut(s) 570, 626, 668
HphI GGTGA 4 cut(s) 73, 89, 298, 958
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 2 cut(s) 274, 501
Hpy188III TCNNGA 4 cut(s) 206, 405, 644, 1000
Hpy8I GTNNAC 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 4, 229, 785, 873
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 5 cut(s) 92, 234, 240, 288, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 5 cut(s) 150, 260, 315, 396, 543
HpySE526I ACGT 1 cut(s) 932
Hsp92II CATG 8 cut(s) 133, 180, 288, 422, 468, 647, 800, 841
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
LmnI GCTCC 2 cut(s) 143, 664
Lsp1109I GCAGC 1 cut(s) 787
LweI GCATC 1 cut(s) 401
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 3 cut(s) 61, 77, 572
MalI GATC 8 cut(s) 114, 305, 450, 498, 503, 780, 874, 1004
MboI GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
MboII GAAGA 3 cut(s) 12, 50, 488
MflI RGATCY 2 cut(s) 448, 1002
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 5 cut(s) 209, 432, 905, 943, 978
MlyI GAGTC 3 cut(s) 26, 320, 503
MmeI TCCRAC 1 cut(s) 671
MnlI CCTC 9 cut(s) 67, 113, 393, 673, 745, 966, 976, 979, 1030
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 3 cut(s) 354, 372, 846
MslI CAYNNNNRTG 2 cut(s) 423, 894
MspI CCGG 3 cut(s) 570, 626, 668
MspR9I CCNGG 2 cut(s) 747, 902
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 2 cut(s) 747, 902
MwoI GCNNNNNNNGC 1 cut(s) 635
NdeI CATATG 1 cut(s) 236
NdeII GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
NlaIII CATG 8 cut(s) 133, 180, 288, 422, 468, 647, 800, 841
NlaIV GGNNCC 2 cut(s) 592, 666
NmuCI GTSAC 3 cut(s) 61, 77, 572
NspI RCATGY 3 cut(s) 180, 288, 422
NspV TTCGAA 1 cut(s) 976
PagI TCATGA 1 cut(s) 643
PceI AGGCCT 1 cut(s) 704
PctI GAATGC 1 cut(s) 761
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 479, 518, 859
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 2 cut(s) 617, 802
PleI GAGTC 3 cut(s) 25, 320, 503
PpsI GAGTC 3 cut(s) 25, 320, 503
Ppu21I YACGTR 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 745, 900
PspGI CCWGG 2 cut(s) 745, 900
PspN4I GGNNCC 2 cut(s) 592, 666
PspPI GGNCC 2 cut(s) 552, 591
PsuI RGATCY 2 cut(s) 448, 1002
RsaI GTAC 2 cut(s) 283, 935
RsaNI GTAC 2 cut(s) 282, 934
RseI CAYNNNNRTG 2 cut(s) 423, 894
SaqAI TTAA 3 cut(s) 354, 372, 846
SatI GCNGC 2 cut(s) 616, 801
Sau3AI GATC 8 cut(s) 112, 303, 448, 496, 501, 778, 872, 1002
Sau96I GGNCC 2 cut(s) 552, 591
SchI GAGTC 3 cut(s) 26, 320, 503
ScrFI CCNGG 2 cut(s) 747, 902
SduI GDGCHC 1 cut(s) 367
SetI ASST 9 cut(s) 71, 124, 221, 748, 756, 796, 935, 958, 1064
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 976
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 2 cut(s) 423, 894
Sse9I AATT 5 cut(s) 209, 432, 905, 943, 978
SseBI AGGCCT 1 cut(s) 704
SsiI CCGC 2 cut(s) 616, 1014
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 360
StuI AGGCCT 1 cut(s) 704
StyD4I CCNGG 2 cut(s) 745, 900
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 935
TaqI TCGA 3 cut(s) 348, 486, 976
TasI AATT 5 cut(s) 209, 432, 905, 943, 978
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 3 cut(s) 479, 518, 859
Tru1I TTAA 3 cut(s) 354, 372, 846
Tru9I TTAA 3 cut(s) 354, 372, 846
TscAI CASTG 2 cut(s) 528, 636
TseFI GTSAC 3 cut(s) 61, 77, 572
TseI GCWGC 1 cut(s) 800
Tsp45I GTSAC 3 cut(s) 61, 77, 572
TspDTI ATGAA 4 cut(s) 12, 23, 660, 804
TspRI CASTG 2 cut(s) 528, 636
VpaK11BI GGWCC 1 cut(s) 591
XapI RAATTY 3 cut(s) 209, 432, 905
XceI RCATGY 3 cut(s) 180, 288, 422
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.