Rroxscaffold_4G00280120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000150
Physical Location & Seq
Reverse (-)
2773329 .. 2774584
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280120.1

Sequence Viewer

Length: 339 bp
ATGGAGATGATAGAAAACAATCGGGAAGCTGAATCCGTATTTGTTATGGTGGAGTTCGATCAAGATGATTCCTACACTGGTGGTGTGTACGAAATCAAACTTGACCAATTCAGCAACTCGAGTATGTCATTTGTTTTTCGCATAGCGATTGAAGGAAATGATCCATTTGAAGTTAAGTTCAGCTTTACGCCTGATTATAAGGACATTGAAATGGAAGAAAAAGAATATAGCGCACCTAATGCACCGCCCGAAAGTAAAAGTGTTGCATGGACTTCGAAGGTGCATGGACTTCGAAGGTGGAAGAAGACTTCTTTTCCTTTCCAATTAGTTCTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.04

Weight (kDa)

4.6

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 155
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 3 cut(s) 152, 170, 209
AluBI AGCT 2 cut(s) 29, 183
AluI AGCT 2 cut(s) 29, 183
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 118
AspLEI GCGC 1 cut(s) 233
AsuII TTCGAA 2 cut(s) 275, 292
AvaI CYCGRG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 311
BcgI CGANNNNNNTGC 4 cut(s) 255, 272, 289, 306
BfaI CTAG 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 311
Bpu14I TTCGAA 2 cut(s) 275, 292
Bse1I ACTGG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 2 cut(s) 275, 292
Bsp143I GATC 2 cut(s) 58, 160
BspACI CCGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 2 cut(s) 275, 292
BsrI ACTGG 1 cut(s) 82
BssMI GATC 2 cut(s) 58, 160
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBI TTCGAA 2 cut(s) 275, 292
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 61, 163
BstMBI GATC 2 cut(s) 58, 160
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 267, 284
CviJI RGCY 2 cut(s) 29, 183
CviKI_1 RGCY 2 cut(s) 29, 183
CviQI GTAC 1 cut(s) 88
DpnI GATC 2 cut(s) 60, 162
DpnII GATC 2 cut(s) 58, 160
Eco88I CYCGRG 1 cut(s) 118
FaeI CATG 2 cut(s) 270, 287
FaiI YATR 7 cut(s) 47, 125, 143, 198, 228, 268, 285
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 2 cut(s) 266, 283
FspBI CTAG 1 cut(s) 337
GlaI GCGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 270, 287
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 32, 68
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 23, 62
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 146, 271, 288
HpyCH4V TGCA 3 cut(s) 242, 266, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 270, 287
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 2 cut(s) 58, 160
LpnPI CCDG 2 cut(s) 63, 204
MaeI CTAG 1 cut(s) 337
MalI GATC 2 cut(s) 60, 162
MboI GATC 2 cut(s) 58, 160
MboII GAAGA 3 cut(s) 227, 313, 316
MluCI AATT 2 cut(s) 107, 323
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 58, 160
NlaIII CATG 2 cut(s) 270, 287
NspV TTCGAA 2 cut(s) 275, 292
PaeR7I CTCGAG 1 cut(s) 118
PfeI GAWTC 2 cut(s) 32, 68
PsiI TTATAA 1 cut(s) 198
PspXI VCTCGAGB 1 cut(s) 118
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 2 cut(s) 58, 160
SetI ASST 5 cut(s) 31, 185, 238, 282, 299
Sfr274I CTCGAG 1 cut(s) 118
SfuI TTCGAA 2 cut(s) 275, 292
SlaI CTCGAG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 107, 323
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 337
TaqI TCGA 4 cut(s) 57, 119, 275, 292
TasI AATT 2 cut(s) 107, 323
TfiI GAWTC 2 cut(s) 32, 68
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 118
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.