Rroxscaffold_3G00258780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000150
Physical Location & Seq
Reverse (-)
53244404 .. 53246706
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258780.1

Sequence Viewer

Length: 978 bp
ATGCCATACCCACGGGAGCTCAGTGAACCAGATCATGGCTCAAACTTAGCTGAACCAGATCGCAACTTAAGCAGCAATCAACCCTTGAAGAAGGGGGAATGCAGAAGTGTTTATTTTCTGTTGAAGTTGGAAGGCAGTGGATGTGGACATGTCCTATATGAAGTAAAGATCGAAGGGGGAAAAATCTTGGGAAAAGGTGGTGAATTTCTTGATCCTGTATTCAAGTTTTTTGATAGAAGTAATCCTGATGCCCCAGCGGAATATCTCTTGGGGGCTACCAGGGTCAACAGCCGCACCAAATTATATTTATTGCAACGTGAGGGTTTTAGCCAATCGTGGCTCAAGGGGTGCAGCACCCGCGGCTATCACTCATATCAAGCATGCACTTTCGACGTAGTGACTGAGGAATTGAAGCCGTTCAAGCCGCCTGAGCAATACAAAACAGCTGCACTTCTTATTCCAGCATATGGCAAGCTTTATCATCTTGCACATCCCACAGCCTACACTTTGGATGGAATGCCAGACCCGGCCTTTGAGGTTTATGATCCACACTCTGACTCCTGGAAGAGATGCTCTCCATTTCCTCGCTATCAGAAGGACTGGTCTAGAACTAGAATAAATGGTTATGCTATTTGTTACGGCTGTATTCTGGTTTCTATGCAGCCTGATGAGAAATGTGAGATGTGGGTATATCAGGTGACTTTGGATAAATGGAGAGAGGTTAATATCCCTACTGATGACAATTCGGATCTTTATTATCCTTTTCATGGGAAAGCTGTGGTTATAGACAATATTATTTATGCCTTATCTGGAAACGAAACGGTTATAGCATTCTCTCTTTTGACAAAACAAATGGCAGACGGTAGTATAGAGTACTCTGTGGACAAACCACGTCTGCTGCATGGCTTGCGTACGTGTTTTCACATGGATTCTGATTGTTATGGTAGGACTGAGTGTTTGGTTCATTTGGGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.95

Weight (kDa)

6.07

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 35, 467
AccII CGCG 1 cut(s) 360
AciI CCGC 5 cut(s) 257, 292, 358, 360, 425
AclWI GGATC 3 cut(s) 206, 539, 756
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 875, 913
AfiI CCNNNNNNNGG 3 cut(s) 35, 467, 767
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 2 cut(s) 148, 914
AgsI TTSAA 5 cut(s) 88, 124, 223, 412, 421
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 2 cut(s) 278, 560
AluBI AGCT 5 cut(s) 19, 50, 446, 475, 776
AluI AGCT 5 cut(s) 19, 50, 446, 475, 776
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 3 cut(s) 206, 539, 756
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 5 cut(s) 72, 351, 446, 661, 898
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 4 cut(s) 515, 547, 940, 972
Asp700I GAANNNNTTC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 212, 709
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 5 cut(s) 84, 363, 433, 673, 885
BccI CCATC 1 cut(s) 506
BceAI ACGGC 2 cut(s) 400, 655
BciT130I CCWGG 2 cut(s) 280, 562
BcnI CCSGG 1 cut(s) 527
BfaI CTAG 2 cut(s) 606, 612
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 8 cut(s) 73, 292, 352, 361, 425, 447, 662, 899
BlsI GCNGC 8 cut(s) 74, 293, 353, 362, 426, 448, 663, 900
BmcAI AGTACT 1 cut(s) 875
Bme1390I CCNGG 3 cut(s) 280, 527, 562
BmgBI CACGTC 1 cut(s) 893
BmrFI CCNGG 3 cut(s) 280, 527, 562
BmsI GCATC 2 cut(s) 238, 560
BplI GAGNNNNNCTC 2 cut(s) 559, 591
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 527
BsaAI YACGTR 1 cut(s) 915
BsaJI CCNNGG 3 cut(s) 11, 279, 358
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 467, 767
Bse1I ACTGG 1 cut(s) 605
BseBI CCWGG 2 cut(s) 280, 562
BseDI CCNNGG 3 cut(s) 11, 279, 358
BseGI GGATG 3 cut(s) 146, 490, 517
BseLI CCNNNNNNNGG 3 cut(s) 35, 467, 767
BseMII CTCAG 4 cut(s) 34, 393, 420, 942
BseNI ACTGG 1 cut(s) 605
BseXI GCAGC 5 cut(s) 84, 363, 433, 673, 885
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 2 cut(s) 370, 432
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 527
BsiWI CGTACG 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 35, 467, 767
BsmI GAATGC 3 cut(s) 104, 522, 830
BsnI GGCC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 6 cut(s) 31, 58, 168, 211, 544, 748
BspACI CCGC 5 cut(s) 257, 292, 358, 360, 425
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 4 cut(s) 33, 394, 421, 943
BspFNI CGCG 1 cut(s) 360
BspPI GGATC 3 cut(s) 206, 539, 756
BspTI CTTAAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 11, 279, 358
BssMI GATC 6 cut(s) 31, 58, 168, 211, 544, 748
Bst2UI CCWGG 2 cut(s) 280, 562
Bst4CI ACNGT 2 cut(s) 823, 863
Bst6I CTCTTC 1 cut(s) 560
BstAFI CTTAAG 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 907
BstBAI YACGTR 1 cut(s) 915
BstC8I GCNNGC 3 cut(s) 382, 473, 908
BstDEI CTNAG 5 cut(s) 20, 46, 402, 429, 951
BstDSI CCRYGG 2 cut(s) 11, 358
BstF5I GGATG 3 cut(s) 146, 490, 517
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 6 cut(s) 34, 61, 171, 214, 547, 751
BstMBI GATC 6 cut(s) 31, 58, 168, 211, 544, 748
BstMWI GCNNNNNNNGC 6 cut(s) 69, 357, 360, 421, 430, 907
BstNI CCWGG 2 cut(s) 280, 562
BstNSI RCATGY 2 cut(s) 152, 384
BstSCI CCNGG 3 cut(s) 278, 525, 560
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 5 cut(s) 84, 363, 433, 673, 885
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BsuRI GGCC 1 cut(s) 530
BtgI CCRYGG 2 cut(s) 11, 358
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 3 cut(s) 146, 490, 517
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 28, 142
Cac8I GCNNGC 3 cut(s) 382, 473, 908
Cfr42I CCGCGG 1 cut(s) 361
Csp6I GTAC 2 cut(s) 874, 912
CviAII CATG 6 cut(s) 35, 149, 381, 767, 902, 925
CviQI GTAC 2 cut(s) 874, 912
DdeI CTNAG 5 cut(s) 20, 46, 402, 429, 951
DpnI GATC 6 cut(s) 33, 60, 170, 213, 546, 750
DpnII GATC 6 cut(s) 31, 58, 168, 211, 544, 748
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 278, 560
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 6 cut(s) 38, 152, 384, 770, 905, 928
FatI CATG 6 cut(s) 34, 148, 380, 766, 901, 924
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 8 cut(s) 73, 292, 352, 361, 425, 447, 662, 899
FokI GGATG 3 cut(s) 153, 477, 524
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 8 cut(s) 73, 292, 352, 361, 425, 447, 662, 899
FspBI CTAG 2 cut(s) 606, 612
GluI GCNGC 8 cut(s) 73, 292, 352, 361, 425, 447, 662, 899
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 530
HapII CCGG 1 cut(s) 527
Hin1II CATG 6 cut(s) 38, 152, 384, 770, 905, 928
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 2 cut(s) 557, 929
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 212, 709
Hpy166II GTNNAC 4 cut(s) 26, 146, 286, 883
Hpy188I TCNGA 4 cut(s) 556, 594, 748, 934
Hpy188III TCNNGA 4 cut(s) 209, 245, 606, 810
Hpy8I GTNNAC 4 cut(s) 26, 146, 286, 883
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 85, 125, 167, 589
HpyCH4III ACNGT 2 cut(s) 823, 863
HpyCH4IV ACGT 4 cut(s) 316, 393, 892, 914
HpyCH4V TGCA 8 cut(s) 102, 313, 351, 384, 449, 488, 661, 901
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 357, 360, 421, 430, 907
HpyF3I CTNAG 5 cut(s) 20, 46, 402, 429, 951
HpySE526I ACGT 4 cut(s) 316, 393, 892, 914
Hsp92II CATG 6 cut(s) 38, 152, 384, 770, 905, 928
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 6 cut(s) 31, 58, 168, 211, 544, 748
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 5 cut(s) 84, 363, 433, 673, 885
LweI GCATC 2 cut(s) 238, 560
MaeI CTAG 2 cut(s) 606, 612
MaeII ACGT 4 cut(s) 316, 393, 892, 914
MaeIII GTNAC 3 cut(s) 397, 635, 697
MalI GATC 6 cut(s) 33, 60, 170, 213, 546, 750
MboI GATC 6 cut(s) 31, 58, 168, 211, 544, 748
MboII GAAGA 2 cut(s) 100, 577
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 203, 299, 407, 742
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 313, 397, 529, 594, 712
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 2 cut(s) 68, 723
MspA1I CMGCKG 3 cut(s) 257, 360, 446
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 3 cut(s) 280, 527, 562
Mva1269I GAATGC 3 cut(s) 104, 522, 830
MvaI CCWGG 2 cut(s) 280, 562
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 6 cut(s) 69, 357, 360, 421, 430, 907
NciI CCSGG 1 cut(s) 527
NdeI CATATG 1 cut(s) 466
NdeII GATC 6 cut(s) 31, 58, 168, 211, 544, 748
NlaIII CATG 6 cut(s) 38, 152, 384, 770, 905, 928
NmuCI GTSAC 2 cut(s) 397, 697
NspI RCATGY 2 cut(s) 152, 384
PaeI GCATGC 1 cut(s) 384
PciI ACATGT 1 cut(s) 148
PctI GAATGC 3 cut(s) 104, 522, 830
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 929
Pfl23II CGTACG 1 cut(s) 911
PflMI CCANNNNNTGG 2 cut(s) 35, 467
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 8 cut(s) 74, 293, 353, 362, 426, 448, 663, 900
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 1 cut(s) 915
PscI ACATGT 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 278, 560
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 2 cut(s) 278, 560
PspLI CGTACG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 875, 913
RsaNI GTAC 2 cut(s) 874, 912
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 361
SaqAI TTAA 2 cut(s) 68, 723
SatI GCNGC 8 cut(s) 73, 292, 352, 361, 425, 447, 662, 899
Sau3AI GATC 6 cut(s) 31, 58, 168, 211, 544, 748
ScaI AGTACT 1 cut(s) 875
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 280, 527, 562
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 238, 560
Sfr303I CCGCGG 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 67, 341
SmoI CTYRAG 2 cut(s) 67, 341
SphI GCATGC 1 cut(s) 384
Sse9I AATT 4 cut(s) 203, 299, 407, 742
SsiI CCGC 5 cut(s) 257, 292, 358, 360, 425
SspI AATATT 1 cut(s) 793
SspMI CTAG 2 cut(s) 606, 612
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 278, 525, 560
TaaI ACNGT 2 cut(s) 823, 863
TaiI ACGT 4 cut(s) 319, 396, 895, 917
TaqI TCGA 2 cut(s) 171, 390
TasI AATT 4 cut(s) 203, 299, 407, 742
TatI WGTACW 1 cut(s) 873
TauI GCSGC 3 cut(s) 294, 363, 427
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 2 cut(s) 68, 723
Tru9I TTAA 2 cut(s) 68, 723
TscAI CASTG 2 cut(s) 28, 142
TseFI GTSAC 2 cut(s) 397, 697
TseI GCWGC 5 cut(s) 72, 351, 446, 661, 898
Tsp45I GTSAC 2 cut(s) 397, 697
TspDTI ATGAA 3 cut(s) 174, 755, 953
TspRI CASTG 2 cut(s) 28, 142
Van91I CCANNNNNTGG 2 cut(s) 35, 467
Vha464I CTTAAG 1 cut(s) 67
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 2 cut(s) 152, 384
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 606, 612
ZrmI AGTACT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.