RchiOBHm_Chr1g0379041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000150
Physical Location & Seq
Reverse (-)
65234072 .. 65236074
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60239

Sequence Viewer

Length: 543 bp
ATGTCACCGCCTTGTGAAGTCTGTCACCGGCGATTTCCCGACAACATCACCCTCCAAATACATAGGGAGAATGTCCATGTGCTTCATATTTGTGAGATATGTGGATTATCGTTTTACTCTGATACTCTCCTCCAAACACATAAGCAGTGTGTGCATACGCTTCATACGTGTGAGATATGTGGAGTATCGTTTCGCTCTGATGCTCAACTCCAGAGTCATAGGAAATCCAAACATCCGGATTTAAAGAAGAAAAAGATGATGAAGAAGAAGAAGAAGAAGAAGAGGCAGAAGAAGAAGAAGAAGAATGAGGAGGAGGAGGAGGAGGAGAAGGCGAAGGCGGAGGGGGAGCATGCCAGCAGCTTCCCCATAGAGAAGACGATGAACAAGGCGCCCTCACCCTCATCCTCAATTTCTGGCGAGAGCTTCCCCATTGAGAAGACGATGAACAAGGCACCCTCACCCTCGATTTCTGGCGAGAGTGTAACTTGGCTAACTTTCACTTTGGGAATACATATTTCAAGAATTTGCACAATTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.54

Weight (kDa)

9.39

Isoelectric Point (pI)

85.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 56 - 77 5.7e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 388, 451
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 8, 338
AcsI RAATTY 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 2 cut(s) 519, 537
AluBI AGCT 2 cut(s) 360, 423
AluI AGCT 2 cut(s) 360, 423
Aor13HI TCCGGA 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 522
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 4 cut(s) 17, 40, 387, 450
BanI GGYRCC 2 cut(s) 388, 451
BbsI GAAGAC 2 cut(s) 380, 443
BbvI GCAGC 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 390, 453
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 380, 443
BpmI CTGGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 235
BseGI GGATG 2 cut(s) 232, 401
BseRI GAGGAG 7 cut(s) 119, 323, 326, 329, 332, 335, 338
BseXI GCAGC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 388, 451
BsiSI CCGG 2 cut(s) 28, 236
Bsp13I TCCGGA 1 cut(s) 235
BspACI CCGC 2 cut(s) 8, 338
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 390, 453
BspT107I GGYRCC 2 cut(s) 388, 451
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 351, 355
BstF5I GGATG 2 cut(s) 232, 401
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 2 cut(s) 380, 443
BtsCI GGATG 2 cut(s) 232, 401
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 351, 355
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 27
CviAII CATG 2 cut(s) 77, 350
CviJI RGCY 3 cut(s) 360, 423, 490
CviKI_1 RGCY 3 cut(s) 360, 423, 490
DinI GGCGCC 1 cut(s) 390
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 353
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
FaeI CATG 2 cut(s) 80, 353
FatI CATG 2 cut(s) 76, 349
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 2 cut(s) 219, 388
Fsp4HI GCNGC 1 cut(s) 358
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 392
HapII CCGG 2 cut(s) 28, 236
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 2 cut(s) 80, 353
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 1 cut(s) 214
HpaII CCGG 2 cut(s) 28, 236
HphI GGTGA 4 cut(s) 17, 40, 387, 450
Hpy188I TCNGA 2 cut(s) 121, 199
Hpy188III TCNNGA 4 cut(s) 38, 211, 236, 519
HpyAV CCTTC 2 cut(s) 322, 328
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 154, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 2 cut(s) 80, 353
HspAI GCGC 1 cut(s) 389
KasI GGCGCC 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 235
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 41, 224, 249, 367, 399, 456
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 3 cut(s) 3, 23, 481
MluCI AATT 3 cut(s) 408, 522, 531
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 1 cut(s) 223
MroI TCCGGA 1 cut(s) 235
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 90, 168
MspI CCGG 2 cut(s) 28, 236
MwoI GCNNNNNNNGC 1 cut(s) 151
NarI GGCGCC 1 cut(s) 389
NlaIII CATG 2 cut(s) 80, 353
NlaIV GGNNCC 2 cut(s) 390, 453
NmuCI GTSAC 2 cut(s) 3, 23
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 222
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 390, 453
RseI CAYNNNNRTG 2 cut(s) 90, 168
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 358
SchI GAGTC 1 cut(s) 223
SetI ASST 3 cut(s) 170, 362, 425
SfaNI GCATC 1 cut(s) 190
SfoI GGCGCC 1 cut(s) 390
SgrAI CRCCGGYG 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 90, 168
SphI GCATGC 1 cut(s) 353
Sse9I AATT 3 cut(s) 408, 522, 531
SsiI CCGC 2 cut(s) 8, 338
SspDI GGCGCC 1 cut(s) 388
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 464
TasI AATT 3 cut(s) 408, 522, 531
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 2 cut(s) 3, 23
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 2 cut(s) 3, 23
TspDTI ATGAA 5 cut(s) 74, 152, 275, 395, 458
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.