Rroxscaffold_4G00280300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000150
Physical Location & Seq
Forward (+)
2870175 .. 2875195
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280300.1

Sequence Viewer

Length: 696 bp
ATGCCCAATACCCTGGTGCGCTATATGAGATCGATAGAACTTGAGAAAGTTGAGAAACTTGAGAAACATGAGTACGAAGATTCTGTGGGCGGAAATGGTGTTGACCCATTTACTCTCATCTTCAATGAGAGGTGGAAGATCCCAAAGCTCTGTATATTTCATGGTGCGAGGTTTAGCTCCAGGGTATACATTTTAGTAAATGAAATCAAGTGGCCTTATCGGTCGCCCTTCAGACCCACTGGTGCATTTTTCATTGACACAAATGACTTAGATTCTGATGCTCACCAGATCTCTCCGCCCAAAACACCCAAGACATGGTCTGCAGTTATATCTACATATGGAATGCTTTATTATCTTGCAGAACCAACATGCTTCCCATACATTGATGAGCATTCATTTGAGCGATATGATCCCATAAACGATTCTTGGGAGTCGTTGCCCCCACCACGGTGGAGATACGCACGGGTGGGAAAGACCACATGCAATGGGAATAGTAATGGTTGTGGGAAAGACCACGGTGGGGATAACCGCACGGGTGGGAAAGACCACATGCGAGATTGTAGTGAGATTGAACCTGAAGAAGAAGAGTACAGTGTGACTGCATTTGCTAAAAGTGAAAGCCCATGTGCTTCTGAAGATGAAGACTTCTTTTCCTTCCGAACTGGAACTGTCAAGCCGGGATTGAAATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.58

Weight (kDa)

5.34

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 315
AccI GTMKAC 1 cut(s) 186
AciI CCGC 3 cut(s) 90, 296, 529
AclWI GGATC 2 cut(s) 133, 404
AcuI CTGAAG 3 cut(s) 214, 597, 654
AfaI GTAC 2 cut(s) 74, 590
AfiI CCNNNNNNNGG 3 cut(s) 315, 447, 520
AgsI TTSAA 3 cut(s) 124, 572, 685
AjnI CCWGG 2 cut(s) 12, 179
AleI CACNNNNGTG 1 cut(s) 448
AluBI AGCT 2 cut(s) 148, 177
AluI AGCT 2 cut(s) 148, 177
AlwI GGATC 2 cut(s) 133, 404
AoxI GGCC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 648
BciT130I CCWGG 2 cut(s) 14, 181
BcnI CCSGG 1 cut(s) 678
BfmI CTRYAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 288
Bme1390I CCNGG 3 cut(s) 14, 181, 678
BmrFI CCNGG 3 cut(s) 14, 181, 678
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 62, 80
BpuMI CCSGG 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 12, 180, 446, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 447, 520
Bse1I ACTGG 2 cut(s) 244, 667
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 2 cut(s) 14, 181
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 12, 180, 446, 514
BseLI CCNNNNNNNGG 3 cut(s) 315, 447, 520
BseMI GCAATG 1 cut(s) 490
BseNI ACTGG 2 cut(s) 244, 667
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 1 cut(s) 677
BslI CCNNNNNNNGG 3 cut(s) 315, 447, 520
BsmI GAATGC 2 cut(s) 348, 391
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 29, 138, 288, 409
BspACI CCGC 3 cut(s) 90, 296, 529
BspANI GGCC 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 2 cut(s) 133, 404
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 2 cut(s) 244, 667
BssECI CCNNGG 4 cut(s) 12, 180, 446, 514
BssMI GATC 4 cut(s) 29, 138, 288, 409
BssNAI GTATAC 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 14, 181
Bst4CI ACNGT 4 cut(s) 450, 518, 593, 670
Bst6I CTCTTC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 268
BstDSI CCRYGG 2 cut(s) 446, 514
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 32, 141, 291, 412
BstMBI GATC 4 cut(s) 29, 138, 288, 409
BstMCI CGRYCG 1 cut(s) 224
BstNI CCWGG 2 cut(s) 14, 181
BstNSI RCATGY 3 cut(s) 372, 483, 553
BstSCI CCNGG 3 cut(s) 12, 179, 676
BstSFI CTRYAG 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 2 cut(s) 138, 288
BstXI CCANNNNNNTGG 2 cut(s) 13, 450
BstYI RGATCY 2 cut(s) 138, 288
BstZ17I GTATAC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 446, 514
BtsIMutI CAGTG 2 cut(s) 237, 598
CfoI GCGC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 2 cut(s) 73, 589
CviAII CATG 7 cut(s) 68, 161, 315, 369, 480, 550, 624
CviJI RGCY 5 cut(s) 148, 177, 214, 621, 676
CviKI_1 RGCY 5 cut(s) 148, 177, 214, 621, 676
CviQI GTAC 2 cut(s) 73, 589
DdeI CTNAG 1 cut(s) 268
DpnI GATC 4 cut(s) 31, 140, 290, 411
DpnII GATC 4 cut(s) 29, 138, 288, 409
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
EciI GGCGGA 2 cut(s) 105, 285
Eco57I CTGAAG 3 cut(s) 214, 597, 654
EcoRII CCWGG 2 cut(s) 12, 179
FaeI CATG 7 cut(s) 71, 164, 318, 372, 483, 553, 627
FatI CATG 7 cut(s) 67, 160, 314, 368, 479, 549, 623
FauNDI CATATG 1 cut(s) 337
FblI GTMKAC 1 cut(s) 186
GlaI GCGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 677
HhaI GCGC 1 cut(s) 21
Hin1II CATG 7 cut(s) 71, 164, 318, 372, 483, 553, 627
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 80, 272, 422, 431
HpaII CCGG 1 cut(s) 677
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 103, 187
Hpy188I TCNGA 4 cut(s) 233, 277, 634, 659
Hpy8I GTNNAC 2 cut(s) 103, 187
HpyAV CCTTC 2 cut(s) 238, 664
HpyCH4III ACNGT 4 cut(s) 450, 518, 593, 670
HpyCH4V TGCA 5 cut(s) 245, 323, 359, 483, 602
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 7 cut(s) 71, 164, 318, 372, 483, 553, 627
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 4 cut(s) 29, 138, 288, 409
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 26, 166, 193, 225, 299, 588, 648, 690
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 595
MalI GATC 4 cut(s) 31, 140, 290, 411
MboI GATC 4 cut(s) 29, 138, 288, 409
MboII GAAGA 8 cut(s) 89, 112, 148, 590, 593, 596, 647, 653
MflI RGATCY 2 cut(s) 138, 288
MluCI AATT 1 cut(s) 691
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 2 cut(s) 123, 162
MslI CAYNNNNRTG 1 cut(s) 448
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 3 cut(s) 14, 181, 678
Mva1269I GAATGC 2 cut(s) 348, 391
MvaI CCWGG 2 cut(s) 14, 181
NciI CCSGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 29, 138, 288, 409
NlaIII CATG 7 cut(s) 71, 164, 318, 372, 483, 553, 627
NmuCI GTSAC 1 cut(s) 595
NspI RCATGY 3 cut(s) 372, 483, 553
OliI CACNNNNGTG 1 cut(s) 448
PctI GAATGC 2 cut(s) 348, 391
PfeI GAWTC 3 cut(s) 80, 272, 422
PflFI GACNNNGTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 315
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 12, 179
PspGI CCWGG 2 cut(s) 12, 179
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 138, 288
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 2 cut(s) 74, 590
RsaNI GTAC 2 cut(s) 73, 589
RseI CAYNNNNRTG 1 cut(s) 448
Sau3AI GATC 4 cut(s) 29, 138, 288, 409
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 14, 181, 678
SetI ASST 5 cut(s) 134, 150, 173, 179, 577
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 448
SmlI CTYRAG 2 cut(s) 41, 59
SmoI CTYRAG 2 cut(s) 41, 59
Sse9I AATT 1 cut(s) 691
SsiI CCGC 3 cut(s) 90, 296, 529
StyD4I CCNGG 3 cut(s) 12, 179, 676
TaaI ACNGT 4 cut(s) 450, 518, 593, 670
TaqI TCGA 1 cut(s) 32
TaqII GACCGA 1 cut(s) 210
TasI AATT 1 cut(s) 691
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 3 cut(s) 80, 272, 422
TscAI CASTG 2 cut(s) 244, 598
TseFI GTSAC 1 cut(s) 595
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 149, 216, 241, 384, 654
TspRI CASTG 2 cut(s) 244, 598
Tth111I GACNNNGTC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 315
XceI RCATGY 3 cut(s) 372, 483, 553
XmiI GTMKAC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.