Rmu_sc0006761.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006761.1
OG0000150
Physical Location & Seq
Forward (+)
94702 .. 95658
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006761.1_g000023.1.cds

Sequence Viewer

Length: 807 bp
atgtgctttcctaggattcaagaaccatcattcgagggatatgatccatccagtgattcatgggagtcattgcctcctttcccagattattctctggatcaggcacagaccgagatgaccgtggttttagatggtactatctatgccttggcgcataatattgatttggttatggtcttctctttctggtgggattcagacaaggatggtgacattgttaagcgtcgacattttctggccaacccattgtctctgttaataacggccaagtgtcatccaccgcgcaggttttttttttttttaagaaaaaaaccccatcccattcccacccttgatggggctcgaactcctgacctcttatatatgagaccaaagccttaccaccccaccaaacacacaccgtgcaggttactaggggatagaactcagaatttggttcatttggggaggcaagacttttgtgttgttcaaacaggtgagaacatacattctcttgagtatcaatatctatgtgtttccacctttcgaattgttggtgaagaacaagaattgaaaatcgaaaccttaaagtcatctgtttttcgcatagcgatcgaaggaaatgatccatttgaagttaagttcagctttacacttgattataaggacattgaaccggaagaaacagagtatagcgcaactaatgcactgcctgaaagtaaaagtgctgcatggacttcaaaggtggaagaagacttcttttcctttccaattagtcctaaactaggattggaggcattcagaaccaaaaaagaagatgaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

31.02

Weight (kDa)

5.33

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
Acc36I ACCTGC 2 cut(s) 276, 396
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 281
AclWI GGATC 3 cut(s) 38, 105, 599
AcoI YGGCCR 2 cut(s) 237, 264
AcsI RAATTY 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 336, 337, 764
AgsI TTSAA 6 cut(s) 20, 470, 553, 614, 653, 720
AluBI AGCT 1 cut(s) 627
AluI AGCT 1 cut(s) 627
Alw26I GTCTC 2 cut(s) 255, 361
AlwI GGATC 3 cut(s) 38, 105, 599
AoxI GGCC 2 cut(s) 237, 264
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 430
AspA2I CCTAGG 1 cut(s) 11
AspLEI GCGC 3 cut(s) 154, 285, 677
AsuHPI GGTGA 3 cut(s) 221, 488, 548
AsuII TTCGAA 1 cut(s) 526
AvrII CCTAGG 1 cut(s) 11
BalI TGGCCA 1 cut(s) 239
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 169, 738
BbvI GCAGC 1 cut(s) 694
BccI CCATC 6 cut(s) 34, 55, 125, 200, 324, 329
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BcoDI GTCTC 2 cut(s) 255, 361
BfaI CTAG 3 cut(s) 12, 413, 764
BfuAI ACCTGC 2 cut(s) 276, 396
BisI GCNGC 1 cut(s) 708
BlnI CCTAGG 1 cut(s) 11
BlsI GCNGC 1 cut(s) 709
BpiI GAAGAC 2 cut(s) 169, 738
Bpu14I TTCGAA 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 11, 120, 147
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 337, 764
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 11, 120, 147
BseGI GGATG 4 cut(s) 47, 211, 274, 316
BseLI CCNNNNNNNGG 3 cut(s) 336, 337, 764
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 694
BsgI GTGCAG 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 239, 266
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 336, 337, 764
BsmAI GTCTC 2 cut(s) 255, 361
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 2 cut(s) 239, 266
Bso31I GGTCTC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 4 cut(s) 43, 97, 591, 604
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 239, 266
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 1 cut(s) 283
BspMI ACCTGC 2 cut(s) 276, 396
BspPI GGATC 3 cut(s) 38, 105, 599
BspT104I TTCGAA 1 cut(s) 526
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 11, 120, 147
BssMI GATC 4 cut(s) 43, 97, 591, 604
BssT1I CCWWGG 2 cut(s) 11, 147
Bst4CI ACNGT 2 cut(s) 121, 402
BstAPI GCANNNNNTGC 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 47, 211, 274, 316
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 3 cut(s) 154, 285, 677
BstKTI GATC 4 cut(s) 46, 100, 594, 607
BstMAI GTCTC 2 cut(s) 255, 361
BstMBI GATC 4 cut(s) 43, 97, 591, 604
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 2 cut(s) 169, 738
BsuRI GGCC 2 cut(s) 239, 266
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 4 cut(s) 47, 211, 274, 316
BtsI GCAGTG 1 cut(s) 686
BtsIMutI CAGTG 2 cut(s) 58, 686
BveI ACCTGC 2 cut(s) 276, 396
CfoI GCGC 3 cut(s) 154, 285, 677
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 60, 711
CviJI RGCY 5 cut(s) 239, 266, 341, 376, 627
CviKI_1 RGCY 5 cut(s) 239, 266, 341, 376, 627
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 426
DpnI GATC 4 cut(s) 45, 99, 593, 606
DpnII GATC 4 cut(s) 43, 97, 591, 604
DraIII CACNNNGTG 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 237, 264
Eco130I CCWWGG 2 cut(s) 11, 147
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoT14I CCWWGG 2 cut(s) 11, 147
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 2 cut(s) 11, 147
FaeI CATG 2 cut(s) 63, 714
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FatI CATG 2 cut(s) 59, 710
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 708
FokI GGATG 4 cut(s) 34, 218, 261, 303
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 708
FspBI CTAG 3 cut(s) 12, 413, 764
GlaI GCGC 3 cut(s) 153, 284, 676
GluI GCNGC 1 cut(s) 708
HaeIII GGCC 2 cut(s) 239, 266
HapII CCGG 1 cut(s) 656
HgaI GACGC 1 cut(s) 212
HhaI GCGC 3 cut(s) 154, 285, 677
Hin1II CATG 2 cut(s) 63, 714
Hin6I GCGC 3 cut(s) 152, 283, 675
HinP1I GCGC 3 cut(s) 152, 283, 675
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 4 cut(s) 16, 56, 65, 194
HpaII CCGG 1 cut(s) 656
HphI GGTGA 3 cut(s) 221, 488, 548
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 199, 429, 782
Hpy188III TCNNGA 4 cut(s) 20, 95, 350, 494
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 2 cut(s) 121, 402
HpyCH4V TGCA 3 cut(s) 405, 686, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 2 cut(s) 63, 714
HspAI GCGC 3 cut(s) 152, 283, 675
Kzo9I GATC 4 cut(s) 43, 97, 591, 604
Lsp1109I GCAGC 1 cut(s) 694
MaeI CTAG 3 cut(s) 12, 413, 764
MaeIII GTNAC 2 cut(s) 209, 408
MalI GATC 4 cut(s) 45, 99, 593, 606
MboI GATC 4 cut(s) 43, 97, 591, 604
MboII GAAGA 6 cut(s) 169, 551, 671, 740, 743, 806
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 4 cut(s) 430, 528, 548, 750
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 28, 84, 365, 441, 766
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 5 cut(s) 219, 257, 302, 566, 618
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 776
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 683
NdeII GATC 4 cut(s) 43, 97, 591, 604
NlaIII CATG 2 cut(s) 63, 714
NmuCI GTSAC 1 cut(s) 209
NspV TTCGAA 1 cut(s) 526
PctI GAATGC 1 cut(s) 776
PfeI GAWTC 3 cut(s) 16, 56, 194
PkrI GCNGC 1 cut(s) 709
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 642
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 225
SaqAI TTAA 5 cut(s) 219, 257, 302, 566, 618
SatI GCNGC 1 cut(s) 708
Sau3AI GATC 4 cut(s) 43, 97, 591, 604
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 343
SetI ASST 8 cut(s) 290, 357, 410, 478, 524, 566, 629, 726
SfuI TTCGAA 1 cut(s) 526
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 4 cut(s) 430, 528, 548, 750
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 160
SspMI CTAG 3 cut(s) 12, 413, 764
StyI CCWWGG 2 cut(s) 11, 147
TaaI ACNGT 2 cut(s) 121, 402
TaqI TCGA 6 cut(s) 33, 226, 343, 526, 558, 594
TaqII GACCGA 1 cut(s) 125
TasI AATT 4 cut(s) 430, 528, 548, 750
TfiI GAWTC 3 cut(s) 16, 56, 194
Tru1I TTAA 5 cut(s) 219, 257, 302, 566, 618
Tru9I TTAA 5 cut(s) 219, 257, 302, 566, 618
TscAI CASTG 2 cut(s) 58, 693
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 48, 428
TspRI CASTG 2 cut(s) 58, 693
XagI CCTNNNNNAGG 1 cut(s) 762
XapI RAATTY 1 cut(s) 430
XmaJI CCTAGG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 3 cut(s) 12, 413, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.