Rroxscaffold_2G00090730

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000150
Physical Location & Seq
Reverse (-)
12431312 .. 12437614
6303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090730.1

Sequence Viewer

Length: 897 bp
ATGGAAGACCATTCAGAGGTAGGTTGTATTGTGGAAGATTGTAAATCTTATTTGAGAGCTATCTCTTCCGTTCAGGTACAATCTATTTATCGTGAAGCAAATGGTGTTGCCTATAGTTCGAAACATCTTGCTAGTTTATCTTATTTAGATGATTATTGGCTAGATAAGACTCCTGTGATATCCAGGATGTACTCTATGAGGATTTTTGTTGCGGATCTTCTAGGGGCAACTCATTGGGGCTACTTTTGGTGGGATGTTTGCCCTCATTTTGTTGCCATGACTACCCTAACTATTCGACGACCTCTATTCGACAGACGGCCTCTATTCGACGACCTCTATTCATCCTCTTCATTCTACGCCTCCGACCAAAACCTAAATCCTCTTGGTTCTTCGAATCCAACCGAACTCGACGCCTCGTCCTCCTTCTTTTTCGAGTCGACCAGCTCCGTGCTCCAAGACGGTGAACGGGATCGGAGTTCGAGGCCACCGTTTCGGAGAAACTTTGAGCTTCGAGTCATAGTATCGCATTCGTGTGCAACGACCTTTAGATTTACTGGTGATGGGCAAGAAATGCATATCAAGACTATTCGCTCATTCGTTTTTCATGTCTCGATCGAAGGGAATGATGAATTTGTAGTTCAGTTCAGCTTCACACCAGATTGCAATGACATTGAACCTGTGGAAGAACAGTATTGTGTGTCTAGTGCATTGGTTGAAAGGGAAAGTGCGTGGACTTCGAAGGTCAAAGAAGACTTCTTTTCCTTCCCAACTGGTCCTAAACTGGGATTAGAGGCATTTAGAGCCAAGAAAGAAGACGAAAAAAAAGTGTTCATCTCCACTACTTCACCTAAGACTCCTCTCCTCTCCAAAGGTTCAAAAAAGAAGAAAAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

298

Amino Acids

34.07

Weight (kDa)

6.02

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 437
AciI CCGC 1 cut(s) 212
AclWI GGATC 2 cut(s) 222, 477
AcsI RAATTY 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 2 cut(s) 78, 191
AfiI CCNNNNNNNGG 2 cut(s) 16, 782
AgsI TTSAA 3 cut(s) 674, 716, 876
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 4 cut(s) 59, 444, 508, 648
AluI AGCT 4 cut(s) 59, 444, 508, 648
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 2 cut(s) 222, 477
AoxI GGCC 2 cut(s) 317, 482
ApoI RAATTY 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 3 cut(s) 473, 569, 837
AsuII TTCGAA 3 cut(s) 119, 392, 737
AvaII GGWCC 1 cut(s) 773
BbsI GAAGAC 3 cut(s) 12, 756, 819
Bbv12I GWGCWC 1 cut(s) 453
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 4 cut(s) 132, 161, 221, 702
BfmI CTRYAG 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 773
BmeRI GACNNNNNGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 773
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 3 cut(s) 12, 756, 819
Bpu14I TTCGAA 3 cut(s) 119, 392, 737
BsaHI GRCGYC 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 782
Bse1I ACTGG 3 cut(s) 559, 775, 786
Bse3DI GCAATG 1 cut(s) 670
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 192, 259, 341
BseLI CCNNNNNNNGG 2 cut(s) 16, 782
BseMI GCAATG 1 cut(s) 670
BseNI ACTGG 3 cut(s) 559, 775, 786
BseRI GAGGAG 2 cut(s) 846, 851
Bsh1285I CGRYCG 1 cut(s) 615
BshFI GGCC 2 cut(s) 319, 484
BsiEI CGRYCG 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 453
BslI CCNNNNNNNGG 2 cut(s) 16, 782
BsmAI GTCTC 1 cut(s) 613
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 319, 484
Bsp119I TTCGAA 3 cut(s) 119, 392, 737
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 3 cut(s) 214, 469, 612
BspACI CCGC 1 cut(s) 212
BspANI GGCC 2 cut(s) 319, 484
BspPI GGATC 2 cut(s) 222, 477
BspT104I TTCGAA 3 cut(s) 119, 392, 737
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 3 cut(s) 559, 775, 786
BssMI GATC 3 cut(s) 214, 469, 612
BssNI GRCGYC 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 461, 489, 690
Bst6I CTCTTC 2 cut(s) 70, 352
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 571
BstBI TTCGAA 3 cut(s) 119, 392, 737
BstDEI CTNAG 1 cut(s) 849
BstF5I GGATG 3 cut(s) 192, 259, 341
BstKTI GATC 3 cut(s) 217, 472, 615
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 3 cut(s) 214, 469, 612
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 2 cut(s) 571, 800
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 112
BstV2I GAAGAC 3 cut(s) 12, 756, 819
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 319, 484
BtsCI GGATG 3 cut(s) 192, 259, 341
Cfr13I GGNCC 1 cut(s) 773
CseI GACGC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 77, 190
CviAII CATG 2 cut(s) 277, 605
CviJI RGCY 9 cut(s) 59, 160, 240, 319, 444, 484, 508, 648, 803
CviKI_1 RGCY 9 cut(s) 59, 160, 240, 319, 444, 484, 508, 648, 803
CviQI GTAC 2 cut(s) 77, 190
DdeI CTNAG 1 cut(s) 849
DpnI GATC 3 cut(s) 216, 471, 614
DpnII GATC 3 cut(s) 214, 469, 612
DriI GACNNNNNGTC 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 70, 352
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 2 cut(s) 70, 352
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 576
FaeI CATG 2 cut(s) 280, 608
FaiI YATR 7 cut(s) 114, 197, 278, 518, 576, 606, 895
FatI CATG 2 cut(s) 276, 604
FblI GTMKAC 1 cut(s) 437
FokI GGATG 3 cut(s) 199, 266, 328
FspBI CTAG 4 cut(s) 132, 161, 221, 702
HaeIII GGCC 2 cut(s) 319, 484
HgaI GACGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 2 cut(s) 280, 608
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 5 cut(s) 169, 394, 434, 513, 853
HphI GGTGA 3 cut(s) 473, 569, 837
Hpy166II GTNNAC 3 cut(s) 438, 464, 732
Hpy188I TCNGA 4 cut(s) 16, 364, 474, 495
Hpy188III TCNNGA 3 cut(s) 92, 580, 610
Hpy8I GTNNAC 3 cut(s) 438, 464, 732
Hpy99I CGWCG 3 cut(s) 300, 332, 413
HpyAV CCTTC 4 cut(s) 433, 611, 733, 772
HpyCH4III ACNGT 3 cut(s) 461, 489, 690
HpyCH4V TGCA 4 cut(s) 536, 574, 663, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 800
HpyF3I CTNAG 1 cut(s) 849
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 2 cut(s) 280, 608
Kzo9I GATC 3 cut(s) 214, 469, 612
LmnI GCTCC 2 cut(s) 449, 456
MaeI CTAG 4 cut(s) 132, 161, 221, 702
MalI GATC 3 cut(s) 216, 471, 614
MboI GATC 3 cut(s) 214, 469, 612
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 1 cut(s) 629
MlyI GAGTC 4 cut(s) 163, 443, 522, 847
MmeI TCCRAC 2 cut(s) 387, 422
Mph1103I ATGCAT 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 571, 800
NdeII GATC 3 cut(s) 214, 469, 612
NlaIII CATG 2 cut(s) 280, 608
NsiI ATGCAT 1 cut(s) 576
NspV TTCGAA 3 cut(s) 119, 392, 737
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 536
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 394
PfoI TCCNGGA 1 cut(s) 182
Ple19I CGATCG 1 cut(s) 615
PleI GAGTC 4 cut(s) 163, 442, 521, 847
PpsI GAGTC 4 cut(s) 163, 442, 521, 847
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 773
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 615
RsaI GTAC 2 cut(s) 78, 191
RsaNI GTAC 2 cut(s) 77, 190
RseI CAYNNNNRTG 1 cut(s) 531
SalI GTCGAC 1 cut(s) 436
Sau3AI GATC 3 cut(s) 214, 469, 612
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 4 cut(s) 163, 443, 522, 847
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 112
SfuI TTCGAA 3 cut(s) 119, 392, 737
SinI GGWCC 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 1 cut(s) 629
SsiI CCGC 1 cut(s) 212
SspMI CTAG 4 cut(s) 132, 161, 221, 702
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 461, 489, 690
TasI AATT 1 cut(s) 629
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 394
TspDTI ATGAA 5 cut(s) 330, 339, 593, 642, 820
TspGWI ACGGA 2 cut(s) 58, 436
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 4 cut(s) 132, 161, 221, 702
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.