Rh1BG359100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000150
Physical Location & Seq
Reverse (-)
48971465 .. 48973746
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG359100.1

Sequence Viewer

Length: 714 bp
ATGGAGGCAGCTGGTTATGCCGTCTGTTATGGCCGTTTATTGATTTCAATGTATAACTGCAGAGATTGTGTAGTGCTGGCTTTTCATATTAGTACAGAAAACTGGCATGAAGTCCAAGTCCCCAACTCCAGATATTATCCTTTCCTTGGGAGAGCCGTGGTTGTAGATGGCATTATATATTCCCTGTCTTTTTCTCTGAATCAAGTTCTAGCATTCTCTTTTTGGCGGCATTCAGATGATAATTGTTTCCTAGGCACTCCCTTGCCTTTGCAAGTAAGGGATACCTCGAAGCCACCATCCCCGATGAGGGAGCAGATAACTCAGAATTTGGTTCATTTGGGGAGGCTGGACTTTTGTCTTGTACAGACAGGCCGGAACGAATATTCTATTGAGCATCAATATCTTTGTATCACTAAATTTCGAATCCTCCGTGAAGGACGAGGAACAGAAATCAGAACCCTAAGTTCATATGTTTTTCAAGTCGACTTGATGGGCAGTGGCCTTTTCGAAGTTAACTTCAGCTTTACACCAGATTGTGAGGATGTTGAACCAGAAGAAGACTACTGTCCGACTGCATCAGTTAAAAGTAAAAGTGAAACTACCGGGATGACATCGGAGGACGAACTAAATAAAGCAGATCGGAGGTTGTATGTTGCTACAGGCAGACAAGAGGACTTCTTTTCCATTCCGACCAAAGTGGCAATTCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

27.05

Weight (kDa)

5.17

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 4 - 129 7.3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AciI CCGC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 2 cut(s) 325, 416
AcuI CTGAAG 1 cut(s) 502
AfaI GTAC 2 cut(s) 94, 363
AfiI CCNNNNNNNGG 3 cut(s) 146, 306, 307
AgsI TTSAA 3 cut(s) 48, 479, 548
AluBI AGCT 2 cut(s) 11, 522
AluI AGCT 2 cut(s) 11, 522
AoxI GGCC 3 cut(s) 31, 370, 499
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 325, 416
AspA2I CCTAGG 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 604
AsuII TTCGAA 2 cut(s) 421, 507
AvrII CCTAGG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 161, 304, 484
BceAI ACGGC 3 cut(s) 5, 18, 140
BciVI GTATCC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 604
BfaI CTAG 3 cut(s) 209, 251, 712
BfmI CTRYAG 2 cut(s) 58, 657
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 9, 227
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 2 cut(s) 10, 228
Bme1390I CCNGG 1 cut(s) 604
BmrFI CCNGG 1 cut(s) 604
BmsI GCATC 2 cut(s) 403, 584
BoxI GACNNNNGTC 2 cut(s) 354, 564
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 112
Bpu14I TTCGAA 2 cut(s) 421, 507
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 145, 156, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 306, 307
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 145, 156, 250
BseGI GGATG 3 cut(s) 296, 547, 612
BseLI CCNNNNNNNGG 3 cut(s) 146, 306, 307
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 3 cut(s) 33, 372, 501
BsiSI CCGG 2 cut(s) 373, 603
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 146, 306, 307
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 2 cut(s) 212, 229
BsnI GGCC 3 cut(s) 33, 372, 501
Bsp119I TTCGAA 2 cut(s) 421, 507
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 1 cut(s) 637
BspACI CCGC 1 cut(s) 226
BspANI GGCC 3 cut(s) 33, 372, 501
BspCNI CTCAG 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 62
BspT104I TTCGAA 2 cut(s) 421, 507
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 145, 156, 250
BssMI GATC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 145, 250
Bst4CI ACNGT 1 cut(s) 566
BstAUI TGTACA 1 cut(s) 361
BstBI TTCGAA 2 cut(s) 421, 507
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 321, 461
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 296, 547, 612
BstKTI GATC 1 cut(s) 640
BstMBI GATC 1 cut(s) 637
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstPAI GACNNNNGTC 2 cut(s) 354, 564
BstSCI CCNGG 1 cut(s) 602
BstSFI CTRYAG 2 cut(s) 58, 657
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 564
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 3 cut(s) 33, 372, 501
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 296, 547, 612
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 2 cut(s) 93, 362
CviAII CATG 1 cut(s) 107
CviJI RGCY 9 cut(s) 11, 33, 80, 155, 292, 346, 372, 501, 522
CviKI_1 RGCY 9 cut(s) 11, 33, 80, 155, 292, 346, 372, 501, 522
CviQI GTAC 2 cut(s) 93, 362
DdeI CTNAG 2 cut(s) 321, 461
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 145, 250
Eco57I CTGAAG 1 cut(s) 502
EcoT14I CCWWGG 2 cut(s) 145, 250
ErhI CCWWGG 2 cut(s) 145, 250
FaeI CATG 1 cut(s) 110
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 106
FauNDI CATATG 1 cut(s) 469
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 9, 227
FokI GGATG 3 cut(s) 283, 554, 619
Fsp4HI GCNGC 2 cut(s) 9, 227
FspBI CTAG 3 cut(s) 209, 251, 712
GluI GCNGC 2 cut(s) 9, 227
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 3 cut(s) 33, 372, 501
HapII CCGG 2 cut(s) 373, 603
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 2 cut(s) 484, 514
HindII GTYRAC 2 cut(s) 484, 514
HinfI GANTC 2 cut(s) 199, 423
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 2 cut(s) 373, 603
Hpy166II GTNNAC 2 cut(s) 484, 514
Hpy188I TCNGA 8 cut(s) 198, 235, 324, 455, 570, 616, 642, 690
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 2 cut(s) 484, 514
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 3 cut(s) 60, 271, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 321, 461
Hsp92II CATG 1 cut(s) 110
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 1 cut(s) 637
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 403, 584
MaeI CTAG 3 cut(s) 209, 251, 712
MalI GATC 1 cut(s) 639
MboI GATC 1 cut(s) 637
MboII GAAGA 2 cut(s) 566, 569
MluCI AATT 4 cut(s) 241, 325, 416, 702
MmeI TCCRAC 2 cut(s) 593, 713
MnlI CCTC 9 cut(s) 295, 300, 336, 434, 437, 532, 610, 636, 664
MseI TTAA 2 cut(s) 513, 582
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 373, 603
MspR9I CCNGG 1 cut(s) 604
Mva1269I GAATGC 2 cut(s) 212, 229
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 604
NdeI CATATG 1 cut(s) 469
NdeII GATC 1 cut(s) 637
NlaIII CATG 1 cut(s) 110
NspV TTCGAA 2 cut(s) 421, 507
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PctI GAATGC 2 cut(s) 212, 229
PfeI GAWTC 2 cut(s) 199, 423
PkrI GCNGC 2 cut(s) 10, 228
PshAI GACNNNNGTC 2 cut(s) 354, 564
PstI CTGCAG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 94, 363
RsaNI GTAC 2 cut(s) 93, 362
RseI CAYNNNNRTG 1 cut(s) 234
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 513, 582
SatI GCNGC 2 cut(s) 9, 227
Sau3AI GATC 1 cut(s) 637
ScrFI CCNGG 1 cut(s) 604
SetI ASST 4 cut(s) 13, 287, 524, 647
SfaNI GCATC 2 cut(s) 403, 584
SfcI CTRYAG 2 cut(s) 58, 657
SfuI TTCGAA 2 cut(s) 421, 507
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 4 cut(s) 241, 325, 416, 702
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 383
SspMI CTAG 3 cut(s) 209, 251, 712
StyD4I CCNGG 1 cut(s) 602
StyI CCWWGG 2 cut(s) 145, 250
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 4 cut(s) 287, 421, 483, 507
TasI AATT 4 cut(s) 241, 325, 416, 702
TatI WGTACW 2 cut(s) 92, 361
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 2 cut(s) 199, 423
Tru1I TTAA 2 cut(s) 513, 582
Tru9I TTAA 2 cut(s) 513, 582
TscAI CASTG 1 cut(s) 502
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 4 cut(s) 74, 123, 323, 456
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 502
XapI RAATTY 2 cut(s) 325, 416
XmaJI CCTAGG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 3 cut(s) 209, 251, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.