Rroxscaffold_5G00381770

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
61630370 .. 61634194
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381770.1

Sequence Viewer

Length: 345 bp
ATGGAGATTAAGTTCCCACCGAATCCTTCAAGGAGATCACAATACTTGGCTCATTTGGGTGGCCTGGAATTTTGCCTTGTCCAAAGTGGTTTCACGTACAAAGGCAATTATTGGCAACCTCTTTCTATCACCACATTTCGAATTGAGGAGGAAACAATATCAAGATCTTACATTCCGCAGTTCTTGATGTGGATATTGAGGGCTTTAGTGGTTTCCTTGTTAGCTTCGCTTCACGCAACATTGAACATGAAGAAGGTCCTTCACATATTAAGAAGTTTAAATCGAAGGCCTCGCATGATCCGTTACCTTCCACACCATATCCCACCATATGAGCCCCAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.46

Weight (kDa)

10.16

Isoelectric Point (pI)

78.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 68
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 30, 244
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 1 cut(s) 292
AoxI GGCC 2 cut(s) 61, 287
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 65
BglII AGATCT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 96
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 2 cut(s) 63, 289
BsnI GGCC 2 cut(s) 63, 289
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 35, 164, 297
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 63, 289
BspPI GGATC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 139
BssMI GATC 3 cut(s) 35, 164, 297
Bst2UI CCWGG 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 139
BstKTI GATC 3 cut(s) 38, 167, 300
BstMBI GATC 3 cut(s) 35, 164, 297
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 2 cut(s) 63, 289
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 247, 295
CviJI RGCY 6 cut(s) 50, 63, 203, 224, 289, 334
CviKI_1 RGCY 6 cut(s) 50, 63, 203, 224, 289, 334
CviQI GTAC 1 cut(s) 97
DpnI GATC 3 cut(s) 37, 166, 299
DpnII GATC 3 cut(s) 35, 164, 297
DraI TTTAAA 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 2 cut(s) 250, 298
FaiI YATR 6 cut(s) 248, 266, 296, 318, 328, 330
FatI CATG 2 cut(s) 246, 294
FauNDI CATATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 336
HaeIII GGCC 2 cut(s) 63, 289
Hin1II CATG 2 cut(s) 250, 298
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 162, 184
HpyAV CCTTC 5 cut(s) 36, 247, 269, 279, 317
HpyCH4IV ACGT 2 cut(s) 95, 341
HpySE526I ACGT 2 cut(s) 95, 341
Hsp92II CATG 2 cut(s) 250, 298
Kzo9I GATC 3 cut(s) 35, 164, 297
LpnPI CCDG 2 cut(s) 50, 77
MaeII ACGT 2 cut(s) 95, 341
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 37, 166, 299
MboI GATC 3 cut(s) 35, 164, 297
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 68, 106, 141
MnlI CCTC 5 cut(s) 129, 139, 142, 192, 300
MseI TTAA 3 cut(s) 9, 269, 278
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 328
NdeII GATC 3 cut(s) 35, 164, 297
NlaIII CATG 2 cut(s) 250, 298
NspV TTCGAA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PfeI GAWTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 3 cut(s) 9, 269, 278
Sau3AI GATC 3 cut(s) 35, 164, 297
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 98, 121, 226, 258, 309, 344
SfuI TTCGAA 1 cut(s) 139
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 68, 106, 141
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 1 cut(s) 176
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 63
TaiI ACGT 2 cut(s) 98, 344
TaqI TCGA 2 cut(s) 139, 283
TasI AATT 3 cut(s) 68, 106, 141
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 3 cut(s) 9, 269, 278
Tru9I TTAA 3 cut(s) 9, 269, 278
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.