FvH4_7g27640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000150
Physical Location & Seq
Reverse (-)
20599050 .. 20599699
650 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27640.t1

Sequence Viewer

Length: 531 bp
ATGTCTTTGATTCGGGACGAAATTTCAGCATTCTCGTTTTGGCGGGATTCAGATGATACTTGTTACCTAGGCGCAGCCTTGCCTTTGCATATATGGAATACCGCGCATCCACCATCCCCGATGTTGGAGTATATAACTCAGAATTTGGTTCATTTAGTGGGGCTAGACTTTTGTCTTGTGCAGACTGGCCAGAATGAATATTCTCTTGAGCATCAATATCTTTGTATCACTACATTTCGGATCATACGTGAAGGAGGAGGAACAGAAATCAGAACCCTACGGTCATCTGTTTATCAAGTCGACTTGATGGGCAGCTTCTTTCTGGAAGTTAACTTCAGTTTTACACCAGATTGTGAGGATGTTGAACCAGAAGAAGACTGTTGTCCAACTGCACCAGTTAAAAGTGAAGTTGGAAGTACCAGGATGACATTGGAGGACAAAGAAAATAAAGCAGATCTGAAGTTGTATGTTGCAGCAGGTAGAGAACAGGTGTTCCTTTCCATTCCGACAAAAGTGGCAATTCTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.85

Weight (kDa)

4.57

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 43, 102
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 21, 142
AcuI CTGAAG 2 cut(s) 319, 479
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 365
AjnI CCWGG 1 cut(s) 419
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 2 cut(s) 315, 528
AluI AGCT 2 cut(s) 315, 528
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 74, 312, 473
ApoI RAATTY 2 cut(s) 21, 142
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 2 cut(s) 74, 106
AvrII CCTAGG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 86, 324, 485
BccI CCATC 2 cut(s) 121, 301
BciT130I CCWGG 1 cut(s) 421
BfaI CTAG 3 cut(s) 68, 164, 529
BfuAI ACCTGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 454
BisI GCNGC 3 cut(s) 75, 313, 474
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 3 cut(s) 76, 314, 475
Bme1390I CCNGG 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 115, 220
BoxI GACNNNNGTC 2 cut(s) 171, 381
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 190, 395
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 4 cut(s) 106, 113, 364, 429
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 190, 395
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 86, 324, 485
BsgI GTGCAG 2 cut(s) 200, 375
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 189
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 240, 454
BspACI CCGC 2 cut(s) 43, 102
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 190, 395
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 240, 454
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 282, 380
BstBAI YACGTR 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 138, 524
BstF5I GGATG 4 cut(s) 106, 113, 364, 429
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 2 cut(s) 74, 106
BstKTI GATC 2 cut(s) 243, 457
BstMBI GATC 2 cut(s) 240, 454
BstNI CCWGG 1 cut(s) 421
BstPAI GACNNNNGTC 2 cut(s) 171, 381
BstSCI CCNGG 1 cut(s) 419
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 86, 324, 485
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 4 cut(s) 106, 113, 364, 429
BveI ACCTGC 1 cut(s) 467
CfoI GCGC 2 cut(s) 74, 106
Csp6I GTAC 1 cut(s) 417
CviJI RGCY 5 cut(s) 77, 163, 189, 315, 528
CviKI_1 RGCY 5 cut(s) 77, 163, 189, 315, 528
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 2 cut(s) 138, 524
DpnI GATC 2 cut(s) 242, 456
DpnII GATC 2 cut(s) 240, 454
EaeI YGGCCR 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 319, 479
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 7 cut(s) 90, 92, 94, 132, 134, 245, 468
FaqI GGGAC 1 cut(s) 29
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 75, 313, 474
FokI GGATG 4 cut(s) 93, 100, 371, 436
Fsp4HI GCNGC 3 cut(s) 75, 313, 474
FspBI CTAG 3 cut(s) 68, 164, 529
GlaI GCGC 2 cut(s) 73, 105
GluI GCNGC 3 cut(s) 75, 313, 474
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 2 cut(s) 74, 106
Hin6I GCGC 2 cut(s) 72, 104
HinP1I GCGC 2 cut(s) 72, 104
HincII GTYRAC 2 cut(s) 301, 331
HindII GTYRAC 2 cut(s) 301, 331
HinfI GANTC 2 cut(s) 10, 47
HpaI GTTAAC 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 301, 331
Hpy188I TCNGA 6 cut(s) 52, 141, 240, 272, 459, 507
Hpy188III TCNNGA 3 cut(s) 14, 206, 323
Hpy8I GTNNAC 2 cut(s) 301, 331
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 282, 380
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 88, 181, 392, 473
HpyF3I CTNAG 2 cut(s) 138, 524
HpySE526I ACGT 1 cut(s) 247
HspAI GCGC 2 cut(s) 72, 104
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 240, 454
Lsp1109I GCAGC 3 cut(s) 86, 324, 485
LweI GCATC 2 cut(s) 115, 220
MaeI CTAG 3 cut(s) 68, 164, 529
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 242, 456
MboI GATC 2 cut(s) 240, 454
MboII GAAGA 2 cut(s) 383, 386
MflI RGATCY 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 21, 142, 519
MluNI TGGCCA 1 cut(s) 189
MmeI TCCRAC 4 cut(s) 105, 391, 410, 530
MnlI CCTC 4 cut(s) 248, 251, 349, 427
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 2 cut(s) 330, 399
Msp20I TGGCCA 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 104
NdeII GATC 2 cut(s) 240, 454
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 10, 47
PkrI GCNGC 3 cut(s) 76, 314, 475
Ppu21I YACGTR 1 cut(s) 248
PshAI GACNNNNGTC 2 cut(s) 171, 381
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 330, 399
SatI GCNGC 3 cut(s) 75, 313, 474
Sau3AI GATC 2 cut(s) 240, 454
ScrFI CCNGG 1 cut(s) 421
SetI ASST 6 cut(s) 69, 250, 317, 481, 492, 530
SfaNI GCATC 2 cut(s) 115, 220
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 21, 142, 519
SsiI CCGC 2 cut(s) 43, 102
SspI AATATT 1 cut(s) 200
SspMI CTAG 3 cut(s) 68, 164, 529
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 282, 380
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 21, 142, 519
TfiI GAWTC 2 cut(s) 10, 47
Tru1I TTAA 2 cut(s) 330, 399
Tru9I TTAA 2 cut(s) 330, 399
TseI GCWGC 3 cut(s) 74, 312, 473
TspDTI ATGAA 2 cut(s) 140, 210
XapI RAATTY 2 cut(s) 21, 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 3 cut(s) 68, 164, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.