Rh5CG213000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000150
Physical Location & Seq
Reverse (-)
21553389 .. 21553991
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG213000.1

Sequence Viewer

Length: 375 bp
ATGAAACATGTCAACAGACAACGTGTGTGGATCACCACTTTTGATATTATCTACAAAGAAGGAAAGAGGCGTATCCGTACTCTAGATACTACTATGCGTGAAGTAGATATTAACTGTCTTGGTCGATTCGAACTTGAATCAGGCTTCACGCTAGAATGTGAAGAAGGAAAAGAGATTGTTAGCACCAGCAGTATGATGCAGCCAACTGATGATCCTCGATTGTGCAAGCTTCAACAGGCTGCACGCGATAAGATCCTAGCAGATTCGGAAACGGAGAGGGATGACGTCGAAGTTGAGTTGACGGAAGTTAACCTTGTTGGCCAATCTGTTCAGACCCTGTCGAGAACCAAAGTTTGGTGTTTTCTGAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.43

Weight (kDa)

5.28

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 354
AccII CGCG 1 cut(s) 246
AclWI GGATC 3 cut(s) 38, 206, 247
AcoI YGGCCR 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 2 cut(s) 7, 22
AgsI TTSAA 2 cut(s) 137, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
AlwI GGATC 3 cut(s) 38, 206, 247
AlwNI CAGNNNCTG 1 cut(s) 337
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 199, 239
AsuHPI GGTGA 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 129
BalI TGGCCA 1 cut(s) 321
BbvI GCAGC 2 cut(s) 211, 226
BciVI GTATCC 1 cut(s) 83
BfaI CTAG 3 cut(s) 83, 152, 257
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 2 cut(s) 200, 240
BlsI GCNGC 2 cut(s) 201, 241
BmsI GCATC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 354
BseXI GCAGC 2 cut(s) 211, 226
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 354
BsnI GGCC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 129
Bsp143I GATC 3 cut(s) 30, 211, 252
BspANI GGCC 1 cut(s) 321
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 3 cut(s) 38, 206, 247
BspT104I TTCGAA 1 cut(s) 129
BssMI GATC 3 cut(s) 30, 211, 252
BssNI GRCGYC 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 227, 244
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 3 cut(s) 33, 214, 255
BstMBI GATC 3 cut(s) 30, 211, 252
BstNSI RCATGY 1 cut(s) 11
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 211, 226
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 227, 244
CaiI CAGNNNCTG 1 cut(s) 337
Csp6I GTAC 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 144, 202, 229, 239, 321
CviKI_1 RGCY 5 cut(s) 144, 202, 229, 239, 321
CviQI GTAC 1 cut(s) 78
DpnI GATC 3 cut(s) 32, 213, 254
DpnII GATC 3 cut(s) 30, 211, 252
EaeI YGGCCR 1 cut(s) 319
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 95, 194, 373
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 200, 240
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 200, 240
FspBI CTAG 3 cut(s) 83, 152, 257
GluI GCNGC 2 cut(s) 200, 240
HaeIII GGCC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 1 cut(s) 11
HincII GTYRAC 3 cut(s) 13, 300, 310
HindII GTYRAC 3 cut(s) 13, 300, 310
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 126, 137, 263
HpaI GTTAAC 1 cut(s) 310
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 13, 300, 310
Hpy188I TCNGA 3 cut(s) 268, 333, 366
Hpy188III TCNNGA 2 cut(s) 83, 342
Hpy8I GTNNAC 3 cut(s) 13, 300, 310
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 53, 158
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 22, 285
HpyCH4V TGCA 3 cut(s) 199, 225, 242
HpySE526I ACGT 2 cut(s) 22, 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 3 cut(s) 30, 211, 252
LpnPI CCDG 4 cut(s) 126, 199, 221, 350
Lsp1109I GCAGC 2 cut(s) 211, 226
LweI GCATC 1 cut(s) 186
MaeI CTAG 3 cut(s) 83, 152, 257
MaeII ACGT 2 cut(s) 22, 285
MalI GATC 3 cut(s) 32, 213, 254
MboI GATC 3 cut(s) 30, 211, 252
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 3 cut(s) 60, 225, 270
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 2 cut(s) 111, 309
Msp20I TGGCCA 1 cut(s) 321
MvnI CGCG 1 cut(s) 246
NdeII GATC 3 cut(s) 30, 211, 252
NlaIII CATG 1 cut(s) 11
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 1 cut(s) 129
PciI ACATGT 1 cut(s) 7
PfeI GAWTC 3 cut(s) 126, 137, 263
PflFI GACNNNGTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 2 cut(s) 201, 241
PscI ACATGT 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 252
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 111, 309
SatI GCNGC 2 cut(s) 200, 240
Sau3AI GATC 3 cut(s) 30, 211, 252
SetI ASST 4 cut(s) 25, 231, 288, 315
SfaNI GCATC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 129
SspMI CTAG 3 cut(s) 83, 152, 257
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 2 cut(s) 25, 288
TaqI TCGA 5 cut(s) 124, 129, 217, 288, 341
TfiI GAWTC 3 cut(s) 126, 137, 263
Tru1I TTAA 2 cut(s) 111, 309
Tru9I TTAA 2 cut(s) 111, 309
TseI GCWGC 2 cut(s) 199, 239
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 65, 287, 317
Tth111I GACNNNGTC 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 354
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 11
XspI CTAG 3 cut(s) 83, 152, 257
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.