RLG00000026404

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
2809116 .. 2810608
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026404

Sequence Viewer

Length: 336 bp
ATGAAAATCGAGATTGTTCGGTCATCTGTCTTTCACATCGTGATCGAAGAGAATGATGAATTTAATGTTAAGTTCAGCTTCAAGCCAGATTGTAAGGACATTGAACATGAAGAAGAAGAGTACAGTGCAACTAATGCACTACTTGAAAATGAAATTGCTGCATGGACTAAGATGGTGAAAGAGCGGGACAGCAACGCATGGGTCAGTGTGGCAAGGGTCTTGCGGCGAATCATGGCGGCTGTTTCATGGGTGTGCATTGCAGGCTGTGGGGATTGGGCGAAGTTTGGGCCTTGCTTGTTGGGCTTAGCTGTCTTTAGGCATGATAATGTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

5.16

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 3 cut(s) 184, 223, 236
AcsI RAATTY 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 3 cut(s) 82, 104, 146
AluBI AGCT 2 cut(s) 78, 308
AluI AGCT 2 cut(s) 78, 308
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 187
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 166
BisI GCNGC 3 cut(s) 159, 224, 237
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 3 cut(s) 160, 225, 238
BmgT120I GGNCC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 42
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 3 cut(s) 184, 223, 236
BspANI GGCC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 255
BssMI GATC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 42, 111
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 168, 304
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 134, 261, 300
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 130, 211
Cac8I GCNNGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 121
CviAII CATG 6 cut(s) 107, 162, 198, 232, 246, 320
CviJI RGCY 8 cut(s) 78, 85, 239, 264, 289, 303, 308, 333
CviKI_1 RGCY 8 cut(s) 78, 85, 239, 264, 289, 303, 308, 333
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 168, 304
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 42, 111
EarI CTCTTC 2 cut(s) 42, 111
FaeI CATG 6 cut(s) 110, 165, 201, 235, 249, 323
FaiI YATR 6 cut(s) 108, 163, 199, 233, 247, 321
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 200
FatI CATG 6 cut(s) 106, 161, 197, 231, 245, 319
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 159, 224, 237
Fsp4HI GCNGC 3 cut(s) 159, 224, 237
GluI GCNGC 3 cut(s) 159, 224, 237
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 6 cut(s) 110, 165, 201, 235, 249, 323
HinfI GANTC 1 cut(s) 228
HphI GGTGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 10, 40
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 5 cut(s) 128, 137, 161, 255, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 261, 300
HpyF3I CTNAG 2 cut(s) 168, 304
Hsp92II CATG 6 cut(s) 110, 165, 201, 235, 249, 323
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 99, 246
Lsp1109I GCAGC 1 cut(s) 145
MalI GATC 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 184
MboI GATC 1 cut(s) 42
MboII GAAGA 4 cut(s) 59, 122, 125, 128
MluCI AATT 2 cut(s) 59, 153
MseI TTAA 2 cut(s) 63, 69
MslI CAYNNNNRTG 2 cut(s) 250, 324
MwoI GCNNNNNNNGC 3 cut(s) 134, 261, 300
NdeII GATC 1 cut(s) 42
NlaIII CATG 6 cut(s) 110, 165, 201, 235, 249, 323
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 160, 225, 238
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 2 cut(s) 250, 324
SaqAI TTAA 2 cut(s) 63, 69
SatI GCNGC 3 cut(s) 159, 224, 237
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 287
SetI ASST 2 cut(s) 80, 310
SmiMI CAYNNNNRTG 2 cut(s) 250, 324
Sse9I AATT 2 cut(s) 59, 153
SsiI CCGC 3 cut(s) 184, 223, 236
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 9, 45
TaqII GACCGA 1 cut(s) 9
TasI AATT 2 cut(s) 59, 153
TatI WGTACW 1 cut(s) 120
TauI GCSGC 2 cut(s) 226, 239
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 2 cut(s) 63, 69
Tru9I TTAA 2 cut(s) 63, 69
TscAI CASTG 2 cut(s) 130, 211
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 5 cut(s) 17, 72, 123, 165, 234
TspRI CASTG 2 cut(s) 130, 211
XapI RAATTY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.