Rmu_sc0000634.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000634.1
OG0000150
Physical Location & Seq
Reverse (-)
6203 .. 7267
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000634.1_g000002.1.cds

Sequence Viewer

Length: 1065 bp
atgaaaggtatatctgtgtttgttctggtggagtgccatgggcaaccatacgatggtgcactatatgaagtaaaacttgagcgtaaagagtctgaagaagctgcgggcaaagctggagttgaatcccctttgccagtacttgatccggtattcaagttttttgataagagtttagcacttcccaaacattgtttatttgggggtgcgaggctcgatagctcgaagttatatctaaccgcaaatggaaatccttggcctcacaataagcgcctcaccacccccaagtgctttgtttttgacacagtcaactcaaactcaatctcagccttaaacttccagcactgcatctctccacctaaagcagctaagtcagttagtgcccttatgtctgcatatgggatgctatattatcttgcatgtccatcatgcgccccagagatgccaaagccgtcgttcgagtgttatgatccggccaccaattcttggcgacgcttgcctccttgtccatataggacaatgcatggcccatacatggaggtagttggttttgctgcttgttatggctacatattgatttcattttacaaccacaacgaatcttctgcgatggcttttcatattgatacacaaaagtggcatccagtccaagtctgccagtccaaagatgcatatcctttccgggggagggctgtggtagtagatggtatgatctatgccctttcttggcgtcaaggccaagttatagccttctctttttcccgagattcagatggtaattgttttcttggtgctgccatctctttgcaattaaggaatacctcacatccaccatccccgttacgtgggatgagaactcaaagtttggttcatttggggaagcacgacttttgcctaatacagacgggccggaatgaatattctattgagcatcaatatatgtgtgccaccacatttcaaatccttcacaaaggaggagcaagggtggtgaggaccttacattcatctgtttatcaagtcgacatcaagggtggttattcttttgttgacttcgcctttacaccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.5

Weight (kDa)

8.7

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 53, 483
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 2 cut(s) 104, 237
AclWI GGATC 2 cut(s) 137, 461
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 7 cut(s) 53, 483, 532, 680, 685, 723, 842
AgsI TTSAA 3 cut(s) 122, 154, 956
AleI CACNNNNGTG 1 cut(s) 631
AluBI AGCT 4 cut(s) 101, 113, 219, 365
AluI AGCT 4 cut(s) 101, 113, 219, 365
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 2 cut(s) 137, 461
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 5 cut(s) 254, 471, 523, 733, 904
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 101, 362, 551, 791
AspLEI GCGC 2 cut(s) 270, 431
AspS9I GGNCC 3 cut(s) 524, 904, 990
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 265, 997
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 990
BaeGI GKGCMC 2 cut(s) 61, 382
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 4 cut(s) 88, 374, 538, 778
BccI CCATC 7 cut(s) 47, 430, 601, 695, 764, 803, 838
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BcnI CCSGG 1 cut(s) 680
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 4 cut(s) 102, 363, 552, 792
BlsI GCNGC 4 cut(s) 103, 364, 553, 793
BmcAI AGTACT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 990
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 524, 904, 990
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 6 cut(s) 354, 390, 429, 646, 655, 937
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 680
BsaAI YACGTR 1 cut(s) 842
BsaBI GATNNNNATC 1 cut(s) 669
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 3 cut(s) 37, 251, 679
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 966, 996
Bsc4I CCNNNNNNNGG 7 cut(s) 53, 483, 532, 680, 685, 723, 842
Bse1I ACTGG 3 cut(s) 134, 641, 655
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 3 cut(s) 37, 251, 679
BseGI GGATG 5 cut(s) 405, 637, 823, 830, 852
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 7 cut(s) 53, 483, 532, 680, 685, 723, 842
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 134, 641, 655
BseRI GAGGAG 1 cut(s) 987
BseSI GKGCMC 2 cut(s) 61, 382
BseXI GCAGC 4 cut(s) 88, 374, 538, 778
BshFI GGCC 5 cut(s) 256, 473, 525, 735, 906
BsiHKAI GWGCWC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 4 cut(s) 146, 470, 679, 907
BslI CCNNNNNNNGG 7 cut(s) 53, 483, 532, 680, 685, 723, 842
BsnI GGCC 5 cut(s) 256, 473, 525, 735, 906
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 61, 382
Bsp143I GATC 3 cut(s) 142, 466, 708
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 2 cut(s) 104, 237
BspANI GGCC 5 cut(s) 256, 473, 525, 735, 906
BspCNI CTCAG 1 cut(s) 335
BspPI GGATC 2 cut(s) 137, 461
BsrI ACTGG 3 cut(s) 134, 641, 655
BssECI CCNNGG 3 cut(s) 37, 251, 679
BssMI GATC 3 cut(s) 142, 466, 708
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 2 cut(s) 37, 251
Bst4CI ACNGT 2 cut(s) 304, 1062
BstACI GRCGYC 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 2 cut(s) 106, 494
BstDEI CTNAG 2 cut(s) 322, 366
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 5 cut(s) 405, 637, 823, 830, 852
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 2 cut(s) 270, 431
BstKTI GATC 3 cut(s) 145, 469, 711
BstMBI GATC 3 cut(s) 142, 466, 708
BstMWI GCNNNNNNNGC 2 cut(s) 110, 493
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 678
BstSLI GKGCMC 2 cut(s) 61, 382
BstV1I GCAGC 4 cut(s) 88, 374, 538, 778
BsuRI GGCC 5 cut(s) 256, 473, 525, 735, 906
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 5 cut(s) 405, 637, 823, 830, 852
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 106, 494
CfoI GCGC 2 cut(s) 270, 431
Cfr13I GGNCC 3 cut(s) 524, 904, 990
CseI GACGC 2 cut(s) 498, 716
Csp6I GTAC 1 cut(s) 137
CviAII CATG 5 cut(s) 38, 417, 426, 521, 532
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 322, 366
DpnI GATC 3 cut(s) 144, 468, 710
DpnII GATC 3 cut(s) 142, 466, 708
EaeI YGGCCR 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 37, 251
Eco47I GGWCC 1 cut(s) 990
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 990
EcoT14I CCWWGG 2 cut(s) 37, 251
EcoT22I ATGCAT 2 cut(s) 522, 670
ErhI CCWWGG 2 cut(s) 37, 251
FaeI CATG 5 cut(s) 41, 420, 429, 524, 535
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 869, 901
FatI CATG 5 cut(s) 37, 416, 425, 520, 531
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 4 cut(s) 102, 363, 552, 792
FokI GGATG 5 cut(s) 412, 624, 810, 817, 859
Fsp4HI GCNGC 4 cut(s) 102, 363, 552, 792
GlaI GCGC 2 cut(s) 269, 430
GluI GCNGC 4 cut(s) 102, 363, 552, 792
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 5 cut(s) 256, 473, 525, 735, 906
HapII CCGG 4 cut(s) 146, 470, 679, 907
HgaI GACGC 2 cut(s) 498, 716
HhaI GCGC 2 cut(s) 270, 431
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 5 cut(s) 41, 420, 429, 524, 535
Hin6I GCGC 2 cut(s) 268, 429
HinP1I GCGC 2 cut(s) 268, 429
HincII GTYRAC 3 cut(s) 307, 1018, 1045
HindII GTYRAC 3 cut(s) 307, 1018, 1045
HinfI GANTC 4 cut(s) 89, 122, 596, 764
HpaII CCGG 4 cut(s) 146, 470, 679, 907
HphI GGTGA 2 cut(s) 265, 997
Hpy166II GTNNAC 4 cut(s) 59, 307, 1018, 1045
Hpy188I TCNGA 2 cut(s) 94, 769
Hpy188III TCNNGA 1 cut(s) 759
Hpy8I GTNNAC 4 cut(s) 59, 307, 1018, 1045
Hpy99I CGWCG 2 cut(s) 454, 492
HpyAV CCTTC 2 cut(s) 757, 971
HpyCH4III ACNGT 2 cut(s) 304, 1062
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 7 cut(s) 59, 345, 392, 416, 520, 668, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 493
HpyF3I CTNAG 2 cut(s) 322, 366
HpySE526I ACGT 1 cut(s) 841
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 5 cut(s) 41, 420, 429, 524, 535
HspAI GCGC 2 cut(s) 268, 429
Kzo9I GATC 3 cut(s) 142, 466, 708
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 4 cut(s) 88, 374, 538, 778
LweI GCATC 6 cut(s) 354, 390, 429, 646, 655, 937
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 1 cut(s) 837
MalI GATC 3 cut(s) 144, 468, 710
MboI GATC 3 cut(s) 142, 466, 708
MboII GAAGA 2 cut(s) 107, 591
MhlI GDGCHC 2 cut(s) 61, 382
MluCI AATT 3 cut(s) 478, 775, 806
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 9 cut(s) 201, 267, 281, 507, 529, 678, 829, 965, 981
Mph1103I ATGCAT 2 cut(s) 522, 670
MseI TTAA 2 cut(s) 329, 809
MslI CAYNNNNRTG 1 cut(s) 631
MspI CCGG 4 cut(s) 146, 470, 679, 907
MspR9I CCNGG 1 cut(s) 680
MwoI GCNNNNNNNGC 2 cut(s) 110, 493
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 394
NdeII GATC 3 cut(s) 142, 466, 708
NlaIII CATG 5 cut(s) 41, 420, 429, 524, 535
NsiI ATGCAT 2 cut(s) 522, 670
NspI RCATGY 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 631
PfeI GAWTC 3 cut(s) 122, 596, 764
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 2 cut(s) 53, 483
PkrI GCNGC 4 cut(s) 103, 364, 553, 793
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 842
PpuMI RGGWCCY 1 cut(s) 990
Psp5II RGGWCCY 1 cut(s) 990
PspPI GGNCC 3 cut(s) 524, 904, 990
PspPPI RGGWCCY 1 cut(s) 990
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 631
SalI GTCGAC 1 cut(s) 1016
SaqAI TTAA 2 cut(s) 329, 809
SatI GCNGC 4 cut(s) 102, 363, 552, 792
Sau3AI GATC 3 cut(s) 142, 466, 708
Sau96I GGNCC 3 cut(s) 524, 904, 990
ScaI AGTACT 1 cut(s) 138
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 2 cut(s) 61, 382
SfaNI GCATC 6 cut(s) 354, 390, 429, 646, 655, 937
SinI GGWCC 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 478, 775, 806
SsiI CCGC 2 cut(s) 104, 237
SspI AATATT 1 cut(s) 917
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 2 cut(s) 37, 251
TaaI ACNGT 2 cut(s) 304, 1062
TaiI ACGT 1 cut(s) 844
TaqI TCGA 4 cut(s) 213, 221, 456, 1017
TasI AATT 3 cut(s) 478, 775, 806
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 3 cut(s) 122, 596, 764
Tru1I TTAA 2 cut(s) 329, 809
Tru9I TTAA 2 cut(s) 329, 809
TscAI CASTG 1 cut(s) 347
TseI GCWGC 4 cut(s) 101, 362, 551, 791
TspDTI ATGAA 7 cut(s) 17, 81, 567, 605, 857, 927, 990
TspRI CASTG 1 cut(s) 347
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 2 cut(s) 53, 483
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 990
XceI RCATGY 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 1017
ZrmI AGTACT 1 cut(s) 138
Zsp2I ATGCAT 2 cut(s) 522, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.