MD06G1178900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000150
Physical Location & Seq
Reverse (-)
31894582 .. 31895499
918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1178900.v1.1.491

Sequence Viewer

Length: 795 bp
ATGTCTGCATACGGAAAGCTTTATAATCTTGCATCTCCACAGTGCTTCCGAGTAATGCCGAAGGTATTGTTTGAGCGGTATGATTCCAAAACTGATTCTTGGGAATCTCTTACTCATTTTGCATATTCTCGGGAACGGTCCAACATGCAGATAGCAGGTTATGCTGTTTGTCATGGATGTATTTTGGTTTCAACATGCAATTTTCGATTTGAGTTCATGGTTTTTCATATAGACAATAATACCTGGCATCAAGTTGATATATCTAGAAAGGAAGCTTATTATTCTGCTTTTCGAGGGAGGGTCGTGGTTGTAGGCAACTCTATATATGCCTTATCTATACAACGTGGAAAGGTTATAGCGTTCTCACTTAAGATGAAAATAGGGAATGATGGTCGTATTACCTATTCGCTAGAGGAACCATTCTTTTTGCCAGGACTGGAGAGTAGGGTTGCGGACAGTACGGAATCTGGTCGTATTTCTAGGCCAACAGAGTATTTGGTTCATTTGGGGAAGTTGGAGTTCTGTCTTCTTCAAACTATCTCAACTGATTGGAAGGAGTCTCAAGAGATGTTTATCACCACATTCGAAATTGTCTGTGATGATGAAACAATGCATATCAAGACTTTAGATTCTAGTGTGTGTGATTTCCACATAGGACATTATGGTACACTTCGTATTTGTTTCAGCTTTATGCCAAAATGTGAGGATTTTGAGCCTGAAGAAGAGGAGAGTTTTCGGTTGGTTCATAAAAAGGTGACTGAATATACATCTATACGATATCTTTTTCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.69

Weight (kDa)

6.0

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 2 cut(s) 76, 452
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 2 cut(s) 460, 667
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 192, 533
AjnI CCWGG 2 cut(s) 242, 430
AluBI AGCT 3 cut(s) 19, 275, 687
AluI AGCT 3 cut(s) 19, 275, 687
Alw26I GTCTC 1 cut(s) 564
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 568, 766
AsuII TTCGAA 1 cut(s) 585
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 518
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 244, 432
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 4 cut(s) 264, 410, 480, 633
BfrI CTTAAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 244, 432
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 2 cut(s) 244, 432
BmsI GCATC 2 cut(s) 41, 256
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 2 cut(s) 244, 432
BseGI GGATG 1 cut(s) 182
BseJI GATNNNNATC 1 cut(s) 572
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 740
BshFI GGCC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 564
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 585
BspACI CCGC 2 cut(s) 76, 452
BspANI GGCC 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 585
BspTI CTTAAG 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 244, 432
Bst4CI ACNGT 3 cut(s) 42, 138, 458
Bst6I CTCTTC 1 cut(s) 717
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 585
BstF5I GGATG 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 564
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 244, 432
BstNSI RCATGY 2 cut(s) 148, 198
BstSCI CCNGG 2 cut(s) 242, 430
BstV2I GAAGAC 1 cut(s) 518
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 459, 666
CviAII CATG 4 cut(s) 145, 173, 195, 217
CviJI RGCY 5 cut(s) 19, 275, 484, 687, 715
CviKI_1 RGCY 5 cut(s) 19, 275, 484, 687, 715
CviQI GTAC 2 cut(s) 459, 666
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco32I GATATC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 242, 430
EcoRV GATATC 1 cut(s) 779
EcoT22I ATGCAT 1 cut(s) 615
FaeI CATG 4 cut(s) 148, 176, 198, 220
FatI CATG 4 cut(s) 144, 172, 194, 216
FokI GGATG 1 cut(s) 189
FspBI CTAG 4 cut(s) 264, 410, 480, 633
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 1 cut(s) 484
Hin1II CATG 4 cut(s) 148, 176, 198, 220
HindIII AAGCTT 2 cut(s) 17, 273
HinfI GANTC 6 cut(s) 83, 95, 104, 464, 557, 629
HphI GGTGA 2 cut(s) 568, 766
Hpy166II GTNNAC 1 cut(s) 668
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 4 cut(s) 131, 264, 563, 619
Hpy8I GTNNAC 1 cut(s) 668
HpyAV CCTTC 2 cut(s) 55, 547
HpyCH4III ACNGT 3 cut(s) 42, 138, 458
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 8, 32, 122, 148, 198, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 4 cut(s) 148, 176, 198, 220
LpnPI CCDG 8 cut(s) 141, 229, 256, 417, 422, 444, 453, 729
LweI GCATC 2 cut(s) 41, 256
MaeI CTAG 4 cut(s) 264, 410, 480, 633
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 754
MbiI CCGCTC 1 cut(s) 76
MboII GAAGA 4 cut(s) 518, 521, 731, 734
MluCI AATT 2 cut(s) 199, 588
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 2 cut(s) 165, 495
MnlI CCTC 5 cut(s) 287, 291, 406, 697, 718
Mph1103I ATGCAT 1 cut(s) 615
MseI TTAA 2 cut(s) 369, 793
MspCI CTTAAG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 244, 432
MvaI CCWGG 2 cut(s) 244, 432
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 148, 176, 198, 220
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 2 cut(s) 148, 198
NspV TTCGAA 1 cut(s) 585
PfeI GAWTC 5 cut(s) 83, 95, 104, 464, 629
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 242, 430
PspGI CCWGG 2 cut(s) 242, 430
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 138
RsaI GTAC 2 cut(s) 460, 667
RsaNI GTAC 2 cut(s) 459, 666
SaqAI TTAA 2 cut(s) 369, 793
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 244, 432
SfaNI GCATC 2 cut(s) 41, 256
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 368, 561
SmoI CTYRAG 2 cut(s) 368, 561
Sse9I AATT 2 cut(s) 199, 588
SsiI CCGC 2 cut(s) 76, 452
SspMI CTAG 4 cut(s) 264, 410, 480, 633
StyD4I CCNGG 2 cut(s) 242, 430
TaaI ACNGT 3 cut(s) 42, 138, 458
TaiI ACGT 1 cut(s) 346
TaqI TCGA 3 cut(s) 205, 292, 585
TasI AATT 2 cut(s) 199, 588
TfiI GAWTC 5 cut(s) 83, 95, 104, 464, 629
Tru1I TTAA 2 cut(s) 369, 793
Tru9I TTAA 2 cut(s) 369, 793
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 754
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 6 cut(s) 205, 215, 389, 491, 618, 734
TspGWI ACGGA 2 cut(s) 27, 476
TspRI CASTG 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 138
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 2 cut(s) 148, 198
XspI CTAG 4 cut(s) 264, 410, 480, 633
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.