RLG00000026412

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000150
Physical Location & Seq
Forward (+)
2845150 .. 2847123
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026412

Sequence Viewer

Length: 699 bp
ATGAAGAGACCGGGGATCCCCGCTTTGAAATTTCCTGAAATCGGATCCAAATCTCGCTGGAGATTATTGTTCTGCGGTGGCTGCCATGGAATCGAGGTGAAAGAGGCTCGTCCCCGGGGCCATGATCTCCAATGGCAGGAAGCTGAAGAAGTAGCTGTTCCAGACCTTGATCACCCTGTATTGGAGTTCTTCAATGTGAGGTGGAAGATCGCAAAGCTCTGTATAGTTCATGGTGCGAGGTTTAGCTCCAGGAACCAACATGCTTCCCAAAGGGCTATGGTTACAGATAATGTTATCTATGCCCTATCATCTAGTTTGAGTGAGATTTTAGCTTTCTCTTTTTGGTGGGATTCGAAGGATAACGGTGAGATTACCGAGCGCCGTCATTATATTGGTCCCCGGGTCTCATTGTATGTAAAAGCTCGGGCGTATCCGCCATCCAGATTACATGGGCTGAGGACTCAGAATTTGGTTCATAAGGGGAGGCGGGCCTTTTGCCTTTTGCAGACGGCCATCGACAGCCGTGGAAAATTTGATGTTGATTTCAGCTTCACCCCAGATTGTAGTCAGGTTGAACCAGAAGAAGAAGAGTACTGTGTGACTGCATTTGCTAAAAGTGAAAGCGCGTGTGCTTCTGAAGATGAAGACTTCTATTCCTTCCGAACTGGAACTGTCAAGCTGGGATTGAAATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.53

Weight (kDa)

8.15

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 626
AciI CCGC 4 cut(s) 21, 75, 434, 487
AclWI GGATC 4 cut(s) 10, 23, 39, 52
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 3 cut(s) 29, 466, 530
AcuI CTGAAG 2 cut(s) 165, 657
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 3 cut(s) 41, 136, 181
AgsI TTSAA 4 cut(s) 28, 193, 575, 688
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 8 cut(s) 143, 155, 217, 246, 332, 422, 549, 679
AluI AGCT 8 cut(s) 143, 155, 217, 246, 332, 422, 549, 679
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 4 cut(s) 10, 23, 39, 52
Ama87I CYCGRG 3 cut(s) 114, 399, 423
AoxI GGCC 3 cut(s) 118, 489, 510
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 3 cut(s) 29, 466, 530
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AspLEI GCGC 2 cut(s) 381, 626
AspS9I GGNCC 3 cut(s) 118, 395, 489
AsuC2I CCSGG 5 cut(s) 12, 115, 116, 400, 401
AsuHPI GGTGA 4 cut(s) 109, 164, 377, 544
AsuII TTCGAA 1 cut(s) 353
AvaI CYCGRG 3 cut(s) 114, 399, 423
AvaII GGWCC 1 cut(s) 395
BamHI GGATCC 2 cut(s) 15, 44
BbsI GAAGAC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 445, 521
BceAI ACGGC 3 cut(s) 366, 507, 525
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 5 cut(s) 12, 115, 116, 400, 401
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 382
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 6 cut(s) 12, 115, 116, 250, 400, 401
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 3 cut(s) 114, 399, 423
BmgT120I GGNCC 3 cut(s) 118, 395, 489
BmiI GGNNCC 5 cut(s) 17, 46, 119, 254, 397
BmrFI CCNGG 6 cut(s) 12, 115, 116, 250, 400, 401
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 2 cut(s) 79, 232
Bpu10I CCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 5 cut(s) 12, 115, 116, 400, 401
BsaBI GATNNNNATC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 8 cut(s) 11, 85, 113, 114, 115, 398, 399, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 136, 181
Bse1I ACTGG 1 cut(s) 670
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 8 cut(s) 11, 85, 113, 114, 115, 398, 399, 523
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 3 cut(s) 41, 136, 181
BseMII CTCAG 2 cut(s) 446, 476
BseNI ACTGG 1 cut(s) 670
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 679
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 3 cut(s) 120, 491, 512
BsiHKCI CYCGRG 3 cut(s) 114, 399, 423
BsiSI CCGG 3 cut(s) 11, 115, 400
BslFI GGGAC 2 cut(s) 96, 381
BslI CCNNNNNNNGG 3 cut(s) 41, 136, 181
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 2 cut(s) 96, 381
BsnI GGCC 3 cut(s) 120, 491, 512
Bso31I GGTCTC 1 cut(s) 409
BsoBI CYCGRG 3 cut(s) 114, 399, 423
Bsp119I TTCGAA 1 cut(s) 353
Bsp143I GATC 5 cut(s) 15, 44, 124, 169, 207
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 4 cut(s) 21, 75, 434, 487
BspANI GGCC 3 cut(s) 120, 491, 512
BspCNI CTCAG 2 cut(s) 447, 475
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 5 cut(s) 17, 46, 119, 254, 397
BspPI GGATC 4 cut(s) 10, 23, 39, 52
BspT104I TTCGAA 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 409
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 8 cut(s) 11, 85, 113, 114, 115, 398, 399, 523
BssMI GATC 5 cut(s) 15, 44, 124, 169, 207
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 365, 596, 673
Bst6I CTCTTC 1 cut(s) 582
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 455, 462
BstDSI CCRYGG 2 cut(s) 85, 523
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 626
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 2 cut(s) 381, 626
BstKTI GATC 5 cut(s) 18, 47, 127, 172, 210
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 5 cut(s) 15, 44, 124, 169, 207
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 6 cut(s) 10, 113, 114, 248, 398, 399
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 15, 44
BstYI RGATCY 2 cut(s) 15, 44
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 3 cut(s) 120, 491, 512
BtgI CCRYGG 2 cut(s) 85, 523
BtsCI GGATG 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 489
CfoI GCGC 2 cut(s) 381, 626
Cfr13I GGNCC 3 cut(s) 118, 395, 489
Cfr9I CCCGGG 2 cut(s) 114, 399
Csp6I GTAC 1 cut(s) 592
CviAII CATG 5 cut(s) 86, 122, 230, 260, 449
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 2 cut(s) 455, 462
DpnI GATC 5 cut(s) 17, 46, 126, 171, 209
DpnII GATC 5 cut(s) 15, 44, 124, 169, 207
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 2 cut(s) 165, 657
Eco88I CYCGRG 3 cut(s) 114, 399, 423
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 5 cut(s) 89, 125, 233, 263, 452
FaqI GGGAC 2 cut(s) 96, 381
FatI CATG 5 cut(s) 85, 121, 229, 259, 448
FauI CCCGC 2 cut(s) 28, 480
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 380, 625
GluI GCNGC 1 cut(s) 82
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 2 cut(s) 79, 232
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 3 cut(s) 120, 491, 512
HapII CCGG 3 cut(s) 11, 115, 400
HhaI GCGC 2 cut(s) 381, 626
Hin1II CATG 5 cut(s) 89, 125, 233, 263, 452
Hin6I GCGC 2 cut(s) 379, 624
HinP1I GCGC 2 cut(s) 379, 624
HinfI GANTC 3 cut(s) 90, 350, 460
HpaII CCGG 3 cut(s) 11, 115, 400
HphI GGTGA 4 cut(s) 109, 164, 377, 544
Hpy188I TCNGA 4 cut(s) 44, 465, 637, 662
Hpy188III TCNNGA 3 cut(s) 35, 161, 441
HpyAV CCTTC 2 cut(s) 349, 667
HpyCH4III ACNGT 3 cut(s) 365, 596, 673
HpyCH4V TGCA 2 cut(s) 505, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 455, 462
Hsp92II CATG 5 cut(s) 89, 125, 233, 263, 452
HspAI GCGC 2 cut(s) 379, 624
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 5 cut(s) 15, 44, 124, 169, 207
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 1 cut(s) 68
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 280, 598
MalI GATC 5 cut(s) 17, 46, 126, 171, 209
MboI GATC 5 cut(s) 15, 44, 124, 169, 207
MboII GAAGA 9 cut(s) 16, 158, 181, 217, 593, 596, 599, 650, 656
MflI RGATCY 2 cut(s) 15, 44
MluCI AATT 4 cut(s) 29, 466, 530, 694
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 6 cut(s) 88, 97, 192, 231, 450, 477
MspI CCGG 3 cut(s) 11, 115, 400
MspR9I CCNGG 6 cut(s) 12, 115, 116, 250, 400, 401
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 5 cut(s) 12, 115, 116, 400, 401
NcoI CCATGG 1 cut(s) 85
NdeII GATC 5 cut(s) 15, 44, 124, 169, 207
NlaIII CATG 5 cut(s) 89, 125, 233, 263, 452
NlaIV GGNNCC 5 cut(s) 17, 46, 119, 254, 397
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 263
NspV TTCGAA 1 cut(s) 353
PfeI GAWTC 2 cut(s) 90, 350
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 5 cut(s) 17, 46, 119, 254, 397
PspPI GGNCC 3 cut(s) 118, 395, 489
PsuI RGATCY 2 cut(s) 15, 44
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 5 cut(s) 15, 44, 124, 169, 207
Sau96I GGNCC 3 cut(s) 118, 395, 489
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 6 cut(s) 12, 115, 116, 250, 400, 401
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 1 cut(s) 395
SmaI CCCGGG 2 cut(s) 116, 401
Sse9I AATT 4 cut(s) 29, 466, 530, 694
SsiI CCGC 4 cut(s) 21, 75, 434, 487
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 6 cut(s) 10, 113, 114, 248, 398, 399
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 365, 596, 673
TaqI TCGA 3 cut(s) 93, 353, 516
TasI AATT 4 cut(s) 29, 466, 530, 694
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 2 cut(s) 90, 350
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 17, 218, 464, 657
TspMI CCCGGG 2 cut(s) 114, 399
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 3 cut(s) 29, 466, 530
XceI RCATGY 1 cut(s) 263
XmaI CCCGGG 2 cut(s) 114, 399
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.