Rroxscaffold_7G00205850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000150
Physical Location & Seq
Forward (+)
55541731 .. 55542450
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205850.1

Sequence Viewer

Length: 720 bp
ATGGTGGAGTTCGATCAAGATGATTTCTACAGTGGTGGTATATACGAAATCAAACTTGACCACCTTCAGCAACTTGAGCATGGTAAATCTGTGGGCGGATTTAGGGTTGACCCTTCGACTCTGCCAATGCTCGAACCTATATTAAAGTTCTTTGATAAGAGTTGGAAGATGGAGGGTTTCTGTTTATTTGATGGTGCCAGATTTGGCAGCCTGTCCAAATTATATCTTATGGTAAATCAAATCCCATGGCCTTATCTCAAGCCCGTCACACCCAAACATGCTTTTCTCTTCGACACATCAAGCTTACATTCAGAACTGCAGCAGGTTTCTCCACCCAAAACAACCAAGGAGTATTGTCTTGTTATATCGGCATATGAAATGTTGTACTATCTTGCACAACCAATGTGCTTTCCTAAGATTCAAGAACCATCATTCGAGCGATATGATCTGTCCAGTGATTCATGGGAGTCCTTGCCTCCTTTCCCAGATTATTCTCTGGATCAGGCACAGACCGAGATGACAGGTTATGCCGTTTGTTATGGCTATATATTGTTGTCCATGAAAACTGAGAAGGGACATGAAGCGGTGGTTTTTCATATTCATAGCAGAACATGGCACAAGGTCAGAATTAGTCCAGAGCATTCTTATTGTTATCCTTTCTATGGGAGGGCTGTAGTTATAGATAATATTATCTATGCCCCGTCAAGTAATCATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.7

Weight (kDa)

5.65

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 25 - 225 2.4e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 2 cut(s) 96, 584
AclWI GGATC 1 cut(s) 507
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
AlwI GGATC 1 cut(s) 507
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 207, 319
BanI GGYRCC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 219, 331
BccI CCATC 3 cut(s) 163, 185, 436
BceAI ACGGC 1 cut(s) 515
BfmI CTRYAG 3 cut(s) 28, 317, 672
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 208, 320
BlsI GCNGC 2 cut(s) 209, 321
BmiI GGNNCC 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 95, 242
BsaJI CCNNGG 2 cut(s) 245, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 245, 345
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 219, 331
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 194
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 13, 445, 499
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 96, 584
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 245, 345
BssMI GATC 3 cut(s) 13, 445, 499
BssT1I CCWWGG 2 cut(s) 245, 345
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 414, 567
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 3 cut(s) 16, 448, 502
BstMBI GATC 3 cut(s) 13, 445, 499
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 3 cut(s) 28, 317, 672
BstV1I GCAGC 2 cut(s) 219, 331
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 37, 460
BveI ACCTGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 385
CviAII CATG 7 cut(s) 80, 246, 278, 462, 559, 578, 612
CviJI RGCY 6 cut(s) 210, 250, 262, 303, 543, 671
CviKI_1 RGCY 6 cut(s) 210, 250, 262, 303, 543, 671
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 414, 567
DpnI GATC 3 cut(s) 15, 447, 501
DpnII GATC 3 cut(s) 13, 445, 499
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 245, 345
Eco57I CTGAAG 1 cut(s) 50
EcoT14I CCWWGG 2 cut(s) 245, 345
ErhI CCWWGG 2 cut(s) 245, 345
FaeI CATG 7 cut(s) 83, 249, 281, 465, 562, 581, 615
FaqI GGGAC 1 cut(s) 588
FatI CATG 7 cut(s) 79, 245, 277, 461, 558, 577, 611
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 208, 320
Fsp4HI GCNGC 2 cut(s) 208, 320
GluI GCNGC 2 cut(s) 208, 320
HaeIII GGCC 1 cut(s) 250
Hin1II CATG 7 cut(s) 83, 249, 281, 465, 562, 581, 615
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 4 cut(s) 118, 418, 458, 467
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 313, 626
Hpy188III TCNNGA 4 cut(s) 17, 422, 497, 635
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 74, 123, 565
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 319, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 414, 567
Hsp92II CATG 7 cut(s) 83, 249, 281, 465, 562, 581, 615
Kzo9I GATC 3 cut(s) 13, 445, 499
LpnPI CCDG 9 cut(s) 211, 224, 308, 466, 482, 488, 498, 507, 648
Lsp1109I GCAGC 2 cut(s) 219, 331
MaeIII GTNAC 1 cut(s) 265
MalI GATC 3 cut(s) 15, 447, 501
MboI GATC 3 cut(s) 13, 445, 499
MboII GAAGA 2 cut(s) 178, 280
MluCI AATT 2 cut(s) 218, 627
MlyI GAGTC 2 cut(s) 112, 476
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 3 cut(s) 166, 486, 660
MseI TTAA 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 640
MwoI GCNNNNNNNGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 13, 445, 499
NlaIII CATG 7 cut(s) 83, 249, 281, 465, 562, 581, 615
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 281
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 2 cut(s) 418, 458
PkrI GCNGC 2 cut(s) 209, 321
PleI GAGTC 2 cut(s) 112, 475
PpsI GAGTC 2 cut(s) 112, 475
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 321
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 208, 320
Sau3AI GATC 3 cut(s) 13, 445, 499
SchI GAGTC 2 cut(s) 112, 476
SetI ASST 6 cut(s) 66, 139, 305, 327, 526, 624
SfcI CTRYAG 3 cut(s) 28, 317, 672
SmlI CTYRAG 2 cut(s) 74, 257
SmoI CTYRAG 2 cut(s) 74, 257
Sse9I AATT 2 cut(s) 218, 627
SsiI CCGC 2 cut(s) 96, 584
SspI AATATT 1 cut(s) 688
StyI CCWWGG 2 cut(s) 245, 345
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 5 cut(s) 12, 116, 132, 291, 435
TaqII GACCGA 1 cut(s) 527
TasI AATT 2 cut(s) 218, 627
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 418, 458
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 2 cut(s) 37, 460
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 207, 319
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 6 cut(s) 390, 450, 575, 584, 590, 594
TspRI CASTG 2 cut(s) 37, 460
XceI RCATGY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.