pycom06g15930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000150
Physical Location & Seq
Forward (+)
20402267 .. 20404448
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15930.2

Sequence Viewer

Length: 1194 bp
ATGCGACCTAAGAAACTTGAACCTGAGTTTAAGTTTGTACTCCCCAAGTATTGTTGGTTTGAGGGTGCGAGATTGCACAACTCCTCTAAATTACACTTAGTGTTAAATAAAGGACTCATACCTCTTCATAACCACCCCGCCGATGACAAGTTCGGCTCATATAGGGGACATATTTATGACACAGCGACTAGGTCATTGGAAACATTCGAGCCTCCTTTAGCACCTAAGCCAGTTTCATATCTTATGTCTGCATACGGAAAGCTTTATAATCTTGCATCTCCACAGTGCTTCCGATTGATGCCGAAGGTATTGTTTGAGCGTTATGATTCCAAAACTGATTCTTGGGAATCTCTTACTCATTTTGCATATTCTCGGGAACGGTCCAACATGGAGATAGCAGGTTATGCTGTTTGTCATGGATGTATTTTGGTTTCAACATGCAATTTTCGATTTGAGTTCATGGTTTTTCATATAGATAGTAATACCTGGCATCAAGTTGATATATCTAGAAAGGAAGCTTATTATTCTGCTTTTCGAGGGAGGGCCGTGGTTGTAGGCAATTCTATATATGCCTTATCTATACAATGTGGAAAGGTTATAGCGTTGTCGCTTAAGATAAAAATAGGGAATGATGGCCTTGTTACCTATTCGCTAGAGGAACCATTCTTTTTGCCAGGACTGGAGAGTAGGGTTGCAGACAGTACGGAATCTGGTCGTATTTCCAGGCCAACAGAGTATTTGGTCCATTTGGGGAAGTTGGAATTCTGTCTTCTTCAATCTATCTCCACTGATTTGGAGGAGTCTCAAGAGATGTTTATCACCACATTCGAAATTGTCTGTGATGATGAAACAATGCATATCAAGACTTTGGATTCTAGTGTCTGTGATTTCCACATAGGACATTCTGGTGGAATTCGTATTTGTTTCAGCTTTATGCCAAAATGTGAGGATTTTGAGCCTGAAGAAGATGAGAGTTTTCGGTTGGCTCATAAAAAGGGGAGAGCCAAGAAGAACAATGCCTTAGATGGTTTCATCTCCATGATAAAATCAAGCAAGAGGGTTCTTCAGAAGTGGCCCCCTAAGTATGAGCTTAGGCGACTGGCTGCAGCATTCCACCCGTTGCCTGTATGCGTCCAAGCGATGGTATTCGTTTTTGTTGTATACTTCTTATACAAACAAATATCCATCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

45.6

Weight (kDa)

8.16

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 1141
AccI GTMKAC 1 cut(s) 1161
AciI CCGC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 761, 912
AcuI CTGAAG 2 cut(s) 981, 1049
AdeI CACNNNGTG 1 cut(s) 100
AfaI GTAC 2 cut(s) 39, 703
AfiI CCNNNNNNNGG 1 cut(s) 1141
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 20, 435, 776
AjnI CCWGG 3 cut(s) 485, 673, 722
AluBI AGCT 4 cut(s) 262, 518, 930, 1090
AluI AGCT 4 cut(s) 262, 518, 930, 1090
Alw26I GTCTC 1 cut(s) 807
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 4 cut(s) 543, 634, 725, 1073
ApeKI GCWGC 2 cut(s) 1103, 1106
ApoI RAATTY 2 cut(s) 761, 912
AspS9I GGNCC 4 cut(s) 381, 543, 742, 1074
AsuHPI GGTGA 1 cut(s) 811
AsuII TTCGAA 1 cut(s) 828
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 2 cut(s) 381, 742
BbsI GAAGAC 1 cut(s) 761
BbvI GCAGC 2 cut(s) 1090, 1118
BccI CCATC 4 cut(s) 626, 1019, 1135, 1193
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 3 cut(s) 487, 675, 724
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 4 cut(s) 189, 507, 653, 876
BfmI CTRYAG 1 cut(s) 1104
BfrI CTTAAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 2 cut(s) 1104, 1107
BlsI GCNGC 2 cut(s) 1105, 1108
Bme1390I CCNGG 3 cut(s) 487, 675, 724
Bme18I GGWCC 2 cut(s) 381, 742
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 4 cut(s) 381, 543, 742, 1074
BmiI GGNNCC 2 cut(s) 660, 1076
BmrFI CCNGG 3 cut(s) 487, 675, 724
BmsI GCATC 3 cut(s) 284, 288, 499
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 2 cut(s) 225, 1091
Bpu14I TTCGAA 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 789
BsaBI GATNNNNATC 1 cut(s) 815
BsaJI CCNNGG 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 1141
Bse1I ACTGG 3 cut(s) 230, 684, 1104
Bse8I GATNNNNATC 1 cut(s) 815
BseBI CCWGG 3 cut(s) 487, 675, 724
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 815
BseLI CCNNNNNNNGG 1 cut(s) 1141
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 3 cut(s) 230, 684, 1104
BseRI GAGGAG 2 cut(s) 73, 812
BseXI GCAGC 2 cut(s) 1090, 1118
BshFI GGCC 4 cut(s) 545, 636, 727, 1075
BsiHKCI CYCGRG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 1141
BsmAI GTCTC 1 cut(s) 807
BsmFI GGGAC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 4 cut(s) 545, 636, 727, 1075
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 828
BspACI CCGC 1 cut(s) 138
BspANI GGCC 4 cut(s) 545, 636, 727, 1075
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 660, 1076
BspMAI CTGCAG 1 cut(s) 1108
BspMI ACCTGC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 828
BspTI CTTAAG 1 cut(s) 611
BsrI ACTGG 3 cut(s) 230, 684, 1104
BssECI CCNNGG 1 cut(s) 546
BssNAI GTATAC 1 cut(s) 1162
Bst1107I GTATAC 1 cut(s) 1162
Bst2UI CCWGG 3 cut(s) 487, 675, 724
Bst4CI ACNGT 3 cut(s) 285, 381, 701
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 828
BstDEI CTNAG 7 cut(s) 9, 24, 97, 225, 1021, 1080, 1091
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 807
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 487, 675, 724
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 3 cut(s) 485, 673, 722
BstSFI CTRYAG 1 cut(s) 1104
BstV1I GCAGC 2 cut(s) 1090, 1118
BstV2I GAAGAC 1 cut(s) 761
BstXI CCANNNNNNTGG 1 cut(s) 793
BstZ17I GTATAC 1 cut(s) 1162
BsuRI GGCC 4 cut(s) 545, 636, 727, 1075
BtgI CCRYGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 1154
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 290, 786
BveI ACCTGC 1 cut(s) 389
Cfr13I GGNCC 4 cut(s) 381, 543, 742, 1074
CseI GACGC 1 cut(s) 1120
Csp6I GTAC 2 cut(s) 38, 702
CviAII CATG 5 cut(s) 388, 416, 438, 460, 1039
CviQI GTAC 2 cut(s) 38, 702
DdeI CTNAG 7 cut(s) 9, 24, 97, 225, 1021, 1080, 1091
DraIII CACNNNGTG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 381, 742
Eco57I CTGAAG 2 cut(s) 981, 1049
Eco88I CYCGRG 1 cut(s) 372
EcoRI GAATTC 2 cut(s) 761, 912
EcoRII CCWGG 3 cut(s) 485, 673, 722
EcoT22I ATGCAT 1 cut(s) 858
FaeI CATG 5 cut(s) 391, 419, 441, 463, 1042
FaqI GGGAC 1 cut(s) 180
FatI CATG 5 cut(s) 387, 415, 437, 459, 1038
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 1161
Fnu4HI GCNGC 2 cut(s) 1104, 1107
FokI GGATG 1 cut(s) 432
Fsp4HI GCNGC 2 cut(s) 1104, 1107
FspBI CTAG 4 cut(s) 189, 507, 653, 876
GluI GCNGC 2 cut(s) 1104, 1107
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 4 cut(s) 545, 636, 727, 1075
HgaI GACGC 1 cut(s) 1120
Hin1II CATG 5 cut(s) 391, 419, 441, 463, 1042
HindIII AAGCTT 2 cut(s) 260, 516
HinfI GANTC 7 cut(s) 114, 326, 338, 347, 707, 800, 872
HphI GGTGA 1 cut(s) 811
Hpy166II GTNNAC 1 cut(s) 1162
Hpy188I TCNGA 2 cut(s) 293, 1068
Hpy188III TCNNGA 4 cut(s) 374, 507, 806, 862
Hpy8I GTNNAC 1 cut(s) 1162
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 285, 381, 701
HpyCH4V TGCA 8 cut(s) 76, 251, 275, 365, 441, 695, 856, 1106
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 7 cut(s) 9, 24, 97, 225, 1021, 1080, 1091
Hsp92II CATG 5 cut(s) 391, 419, 441, 463, 1042
Lsp1109I GCAGC 2 cut(s) 1090, 1118
LweI GCATC 3 cut(s) 284, 288, 499
MaeI CTAG 4 cut(s) 189, 507, 653, 876
MaeIII GTNAC 1 cut(s) 640
MboII GAAGA 7 cut(s) 116, 761, 764, 974, 977, 1021, 1055
MluCI AATT 6 cut(s) 89, 442, 559, 761, 831, 912
MlyI GAGTC 2 cut(s) 108, 809
MmeI TCCRAC 2 cut(s) 408, 738
Mph1103I ATGCAT 1 cut(s) 858
MseI TTAA 3 cut(s) 30, 104, 612
MslI CAYNNNNRTG 3 cut(s) 174, 906, 1037
MspCI CTTAAG 1 cut(s) 611
MspR9I CCNGG 3 cut(s) 487, 675, 724
Mva1269I GAATGC 1 cut(s) 1109
MvaI CCWGG 3 cut(s) 487, 675, 724
MwoI GCNNNNNNNGC 1 cut(s) 404
NlaIII CATG 5 cut(s) 391, 419, 441, 463, 1042
NlaIV GGNNCC 2 cut(s) 660, 1076
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 1 cut(s) 441
NspV TTCGAA 1 cut(s) 828
PctI GAATGC 1 cut(s) 1109
PfeI GAWTC 5 cut(s) 326, 338, 347, 707, 872
PflFI GACNNNGTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 1141
PkrI GCNGC 2 cut(s) 1105, 1108
PleI GAGTC 2 cut(s) 108, 808
PpsI GAGTC 2 cut(s) 108, 808
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 485, 673, 722
PspGI CCWGG 3 cut(s) 485, 673, 722
PspN4I GGNNCC 2 cut(s) 660, 1076
PspPI GGNCC 4 cut(s) 381, 543, 742, 1074
PstI CTGCAG 1 cut(s) 1108
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 2 cut(s) 39, 703
RsaNI GTAC 2 cut(s) 38, 702
RseI CAYNNNNRTG 3 cut(s) 174, 906, 1037
SaqAI TTAA 3 cut(s) 30, 104, 612
SatI GCNGC 2 cut(s) 1104, 1107
Sau96I GGNCC 4 cut(s) 381, 543, 742, 1074
SchI GAGTC 2 cut(s) 108, 809
ScrFI CCNGG 3 cut(s) 487, 675, 724
SfaNI GCATC 3 cut(s) 284, 288, 499
SfcI CTRYAG 1 cut(s) 1104
SfuI TTCGAA 1 cut(s) 828
SinI GGWCC 2 cut(s) 381, 742
SmiMI CAYNNNNRTG 3 cut(s) 174, 906, 1037
SmlI CTYRAG 2 cut(s) 611, 804
SmoI CTYRAG 2 cut(s) 611, 804
Sse9I AATT 6 cut(s) 89, 442, 559, 761, 831, 912
SsiI CCGC 1 cut(s) 138
SspMI CTAG 4 cut(s) 189, 507, 653, 876
StyD4I CCNGG 3 cut(s) 485, 673, 722
TaaI ACNGT 3 cut(s) 285, 381, 701
TaqI TCGA 4 cut(s) 207, 448, 535, 828
TasI AATT 6 cut(s) 89, 442, 559, 761, 831, 912
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 5 cut(s) 326, 338, 347, 707, 872
Tru1I TTAA 3 cut(s) 30, 104, 612
Tru9I TTAA 3 cut(s) 30, 104, 612
TscAI CASTG 2 cut(s) 290, 793
TseI GCWGC 2 cut(s) 1103, 1106
TspDTI ATGAA 6 cut(s) 116, 225, 448, 458, 861, 1021
TspGWI ACGGA 2 cut(s) 270, 719
TspRI CASTG 2 cut(s) 290, 793
Tth111I GACNNNGTC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 1141
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 381, 742
XapI RAATTY 2 cut(s) 761, 912
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 1161
XspI CTAG 4 cut(s) 189, 507, 653, 876
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.