Rh1AG394500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000150
Physical Location & Seq
Reverse (-)
62285663 .. 62286319
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG394500.1

Sequence Viewer

Length: 657 bp
ATGGAGATGAGTGTAAACCAGCGGAAAGATAAATCCATGTTTGTTCTGGTGAGTTTCTATTGTGGTCCATACCATGGTGCACTATATGAAGTAAAACTTGAGCATGGAGAATCCGGTAAAGCTTCGAGTGGTACACGAGTTGAATCCCCTCCACCAGTACTCGTCCCAGTAATTAAGTTTTTTGATAAGCATTTGGATCTGCCAAAGAATTGTTTGTTTGAGGGTGTGAGATTTGGCAGCTGCTCCAAGTTATATCTGATGGCAAATGGACACGGATCACCTTGCAAGCCCATCACAATCCCTAATTCGTTTATTTTTGACACAGATACAAACTCAGGCTCAGGCTCAGGCCTCCAGCACTTCTCTCCATCCAAAGCAGCTAAACCGTATGGTGTTGTTATATCTGCATATGGGATGCTATATTACTTTGCACATCCATCATGCTCCCCATGCATCCCAGACTTGTTGTTCGAACAATATAATTCCGCCACTAATTTATGGGAGTCCTTGCCTTCTTGTCCATATAAGACTCTACCAAAGCCAAGCATGGAGGTAGCTGGTTATGCCGTCTGTTATGGCCATATATTGATTTCAATGTATAACTGTAGAGATTTTGTAGTGCTGGCTTTTCATATTAGTACAGAAAAACTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

7.57

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 2 cut(s) 22, 486
AclWI GGATC 2 cut(s) 204, 283
AcoI YGGCCR 1 cut(s) 577
AfaI GTAC 3 cut(s) 133, 159, 640
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 143, 594
AluBI AGCT 4 cut(s) 122, 240, 380, 557
AluI AGCT 4 cut(s) 122, 240, 380, 557
Alw21I GWGCWC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 204, 283
AoxI GGCC 2 cut(s) 349, 577
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 237, 240, 377
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 61, 270
AsuII TTCGAA 1 cut(s) 471
AvaII GGWCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BalI TGGCCA 1 cut(s) 579
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 227, 249, 389
BccI CCATC 4 cut(s) 253, 299, 376, 445
BceAI ACGGC 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 604
BisI GCNGC 3 cut(s) 238, 241, 378
BlsI GCNGC 3 cut(s) 239, 242, 379
BmcAI AGTACT 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 405, 462
BmuI ACTGGG 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 2 cut(s) 340, 346
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 155, 167, 654
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 4 cut(s) 368, 420, 433, 453
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 3 cut(s) 348, 354, 360
BseNI ACTGG 3 cut(s) 155, 167, 654
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 3 cut(s) 227, 249, 389
BshFI GGCC 2 cut(s) 351, 579
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 351, 579
Bsp119I TTCGAA 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 196, 275
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 2 cut(s) 22, 486
BspANI GGCC 2 cut(s) 351, 579
BspCNI CTCAG 3 cut(s) 347, 353, 359
BspPI GGATC 2 cut(s) 204, 283
BspT104I TTCGAA 1 cut(s) 471
BsrI ACTGG 3 cut(s) 155, 167, 654
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 196, 275
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 387, 605
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 287, 624
BstDEI CTNAG 3 cut(s) 334, 340, 346
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 4 cut(s) 368, 420, 433, 453
BstKTI GATC 2 cut(s) 199, 278
BstMBI GATC 2 cut(s) 196, 275
BstMWI GCNNNNNNNGC 2 cut(s) 450, 563
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 227, 249, 389
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 351, 579
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 4 cut(s) 368, 420, 433, 453
Cac8I GCNNGC 2 cut(s) 287, 624
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 132, 158, 639
CviAII CATG 7 cut(s) 37, 74, 104, 441, 450, 547, 654
CviQI GTAC 3 cut(s) 132, 158, 639
DdeI CTNAG 3 cut(s) 334, 340, 346
DpnI GATC 2 cut(s) 198, 277
DpnII GATC 2 cut(s) 196, 275
EaeI YGGCCR 1 cut(s) 577
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 7 cut(s) 40, 77, 107, 444, 453, 550, 657
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 149
FatI CATG 7 cut(s) 36, 73, 103, 440, 449, 546, 653
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 238, 241, 378
FokI GGATG 4 cut(s) 355, 420, 427, 440
Fsp4HI GCNGC 3 cut(s) 238, 241, 378
GluI GCNGC 3 cut(s) 238, 241, 378
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 351, 579
HapII CCGG 1 cut(s) 114
Hin1II CATG 7 cut(s) 40, 77, 107, 444, 453, 550, 657
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 4 cut(s) 110, 143, 503, 529
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 61, 270
Hpy166II GTNNAC 3 cut(s) 16, 80, 134
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 3 cut(s) 16, 80, 134
HpyAV CCTTC 1 cut(s) 522
HpyCH4III ACNGT 2 cut(s) 387, 605
HpyCH4V TGCA 5 cut(s) 80, 285, 407, 431, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 563
HpyF3I CTNAG 3 cut(s) 334, 340, 346
Hsp92II CATG 7 cut(s) 40, 77, 107, 444, 453, 550, 657
Kzo9I GATC 2 cut(s) 196, 275
LmnI GCTCC 2 cut(s) 248, 449
Lsp1109I GCAGC 3 cut(s) 227, 249, 389
LweI GCATC 2 cut(s) 405, 462
MalI GATC 2 cut(s) 198, 277
MboI GATC 2 cut(s) 196, 275
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 5 cut(s) 171, 208, 304, 481, 493
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 2 cut(s) 512, 523
MnlI CCTC 4 cut(s) 159, 214, 362, 544
Mox20I TGGCCA 1 cut(s) 579
Mph1103I ATGCAT 1 cut(s) 455
MscI TGGCCA 1 cut(s) 579
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 2 cut(s) 22, 240
MspI CCGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 450, 563
NcoI CCATGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 409
NdeII GATC 2 cut(s) 196, 275
NlaIII CATG 7 cut(s) 40, 77, 107, 444, 453, 550, 657
NsiI ATGCAT 1 cut(s) 455
NspV TTCGAA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 351
PfeI GAWTC 2 cut(s) 110, 143
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 239, 242, 379
PleI GAGTC 2 cut(s) 511, 523
PpsI GAGTC 2 cut(s) 511, 523
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 3 cut(s) 133, 159, 640
RsaNI GTAC 3 cut(s) 132, 158, 639
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 3 cut(s) 238, 241, 378
Sau3AI GATC 2 cut(s) 196, 275
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 2 cut(s) 512, 523
SduI GDGCHC 1 cut(s) 82
SetI ASST 6 cut(s) 124, 242, 283, 382, 555, 559
SfaNI GCATC 2 cut(s) 405, 462
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 471
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 5 cut(s) 171, 208, 304, 481, 493
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 2 cut(s) 22, 486
StuI AGGCCT 1 cut(s) 351
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 387, 605
TaqI TCGA 2 cut(s) 125, 471
TasI AATT 5 cut(s) 171, 208, 304, 481, 493
TatI WGTACW 2 cut(s) 157, 638
TfiI GAWTC 2 cut(s) 110, 143
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 3 cut(s) 237, 240, 377
TspDTI ATGAA 2 cut(s) 102, 620
TspGWI ACGGA 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.