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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 35 |
| AccII | CGCG | 1 cut(s) | 357 |
| AciI | CCGC | 6 cut(s) | 254, 289, 334, 355, 357, 422 |
| AclWI | GGATC | 4 cut(s) | 203, 536, 1037, 1205 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AfaI | GTAC | 3 cut(s) | 872, 910, 1078 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 35, 764, 1355 |
| AflII | CTTAAG | 1 cut(s) | 67 |
| AflIII | ACRYGT | 3 cut(s) | 145, 911, 1021 |
| AgsI | TTSAA | 8 cut(s) | 85, 121, 170, 418, 976, 1129, 1136, 1232 |
| AjiI | CACGTC | 2 cut(s) | 140, 890 |
| AjnI | CCWGG | 2 cut(s) | 275, 557 |
| AluBI | AGCT | 7 cut(s) | 19, 50, 443, 461, 472, 773, 1228 |
| AluI | AGCT | 7 cut(s) | 19, 50, 443, 461, 472, 773, 1228 |
| Alw21I | GWGCWC | 1 cut(s) | 21 |
| AlwI | GGATC | 4 cut(s) | 203, 536, 1037, 1205 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1338 |
| Ama87I | CYCGRG | 1 cut(s) | 12 |
| ApeKI | GCWGC | 6 cut(s) | 348, 443, 658, 895, 1198, 1238 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 512, 544, 937, 969 |
| AsuC2I | CCSGG | 3 cut(s) | 13, 14, 524 |
| AsuHPI | GGTGA | 3 cut(s) | 209, 706, 1024 |
| AvaI | CYCGRG | 1 cut(s) | 12 |
| BanII | GRGCYC | 1 cut(s) | 21 |
| Bbv12I | GWGCWC | 1 cut(s) | 21 |
| BbvI | GCAGC | 6 cut(s) | 360, 430, 670, 882, 1210, 1225 |
| BccI | CCATC | 2 cut(s) | 503, 1272 |
| BceAI | ACGGC | 2 cut(s) | 397, 652 |
| BciT130I | CCWGG | 2 cut(s) | 277, 559 |
| BciVI | GTATCC | 2 cut(s) | 226, 1082 |
| BcnI | CCSGG | 3 cut(s) | 13, 14, 524 |
| BfaI | CTAG | 3 cut(s) | 609, 1082, 1151 |
| BfrI | CTTAAG | 1 cut(s) | 67 |
| BfuI | GTATCC | 2 cut(s) | 226, 1082 |
| BmcAI | AGTACT | 1 cut(s) | 872 |
| Bme1390I | CCNGG | 5 cut(s) | 13, 14, 277, 524, 559 |
| BmeT110I | CYCGRG | 1 cut(s) | 12 |
| BmgBI | CACGTC | 2 cut(s) | 140, 890 |
| BmrFI | CCNGG | 5 cut(s) | 13, 14, 277, 524, 559 |
| BmsI | GCATC | 1 cut(s) | 557 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 556, 588 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 1315 |
| BpuMI | CCSGG | 3 cut(s) | 13, 14, 524 |
| BsaJI | CCNNGG | 4 cut(s) | 11, 12, 276, 355 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 539, 569 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 35, 764, 1355 |
| Bse1I | ACTGG | 1 cut(s) | 602 |
| BseBI | CCWGG | 2 cut(s) | 277, 559 |
| BseDI | CCNNGG | 4 cut(s) | 11, 12, 276, 355 |
| BseGI | GGATG | 3 cut(s) | 487, 514, 1287 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 35, 764, 1355 |
| BseMII | CTCAG | 3 cut(s) | 34, 390, 939 |
| BseNI | ACTGG | 1 cut(s) | 602 |
| BseXI | GCAGC | 6 cut(s) | 360, 430, 670, 882, 1210, 1225 |
| BseYI | CCCAGC | 1 cut(s) | 250 |
| BsgI | GTGCAG | 3 cut(s) | 367, 429, 1217 |
| Bsh1236I | CGCG | 1 cut(s) | 357 |
| BsiHKAI | GWGCWC | 1 cut(s) | 21 |
| BsiHKCI | CYCGRG | 1 cut(s) | 12 |
| BsiSI | CCGG | 3 cut(s) | 13, 425, 524 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 35, 764, 1355 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsmI | GAATGC | 2 cut(s) | 519, 827 |
| BsoBI | CYCGRG | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 1 cut(s) | 21 |
| Bsp143I | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| BspACI | CCGC | 6 cut(s) | 254, 289, 334, 355, 357, 422 |
| BspCNI | CTCAG | 3 cut(s) | 33, 391, 940 |
| BspFNI | CGCG | 1 cut(s) | 357 |
| BspHI | TCATGA | 1 cut(s) | 999 |
| BspPI | GGATC | 4 cut(s) | 203, 536, 1037, 1205 |
| BspTI | CTTAAG | 1 cut(s) | 67 |
| BsrI | ACTGG | 1 cut(s) | 602 |
| BssECI | CCNNGG | 4 cut(s) | 11, 12, 276, 355 |
| BssMI | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| Bst2UI | CCWGG | 2 cut(s) | 277, 559 |
| Bst4CI | ACNGT | 3 cut(s) | 820, 860, 1115 |
| Bst6I | CTCTTC | 1 cut(s) | 557 |
| BstAFI | CTTAAG | 1 cut(s) | 67 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 904 |
| BstC8I | GCNNGC | 5 cut(s) | 379, 470, 905, 1226, 1243 |
| BstDEI | CTNAG | 4 cut(s) | 20, 46, 399, 948 |
| BstDSI | CCRYGG | 1 cut(s) | 355 |
| BstF5I | GGATG | 3 cut(s) | 487, 514, 1287 |
| BstFNI | CGCG | 1 cut(s) | 357 |
| BstKTI | GATC | 6 cut(s) | 34, 61, 211, 544, 1032, 1213 |
| BstMBI | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 69, 354, 357, 418, 904 |
| BstNI | CCWGG | 2 cut(s) | 277, 559 |
| BstNSI | RCATGY | 4 cut(s) | 149, 381, 915, 1245 |
| BstSCI | CCNGG | 5 cut(s) | 11, 12, 275, 522, 557 |
| BstUI | CGCG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 6 cut(s) | 360, 430, 670, 882, 1210, 1225 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1192 |
| BsuI | GTATCC | 2 cut(s) | 226, 1082 |
| BtgI | CCRYGG | 1 cut(s) | 355 |
| BtrI | CACGTC | 2 cut(s) | 140, 890 |
| BtsCI | GGATG | 3 cut(s) | 487, 514, 1287 |
| BtsI | GCAGTG | 1 cut(s) | 139 |
| BtsIMutI | CAGTG | 2 cut(s) | 28, 139 |
| Cac8I | GCNNGC | 5 cut(s) | 379, 470, 905, 1226, 1243 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1338 |
| CciI | TCATGA | 1 cut(s) | 999 |
| Cfr42I | CCGCGG | 1 cut(s) | 358 |
| Cfr9I | CCCGGG | 1 cut(s) | 12 |
| Csp6I | GTAC | 3 cut(s) | 871, 909, 1077 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1007, 1042 |
| CviQI | GTAC | 3 cut(s) | 871, 909, 1077 |
| DdeI | CTNAG | 4 cut(s) | 20, 46, 399, 948 |
| DpnI | GATC | 6 cut(s) | 33, 60, 210, 543, 1031, 1212 |
| DpnII | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| Eam1104I | CTCTTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 557 |
| Ecl136II | GAGCTC | 1 cut(s) | 19 |
| Eco24I | GRGCYC | 1 cut(s) | 21 |
| Eco53kI | GAGCTC | 1 cut(s) | 19 |
| Eco88I | CYCGRG | 1 cut(s) | 12 |
| EcoICRI | GAGCTC | 1 cut(s) | 19 |
| EcoRII | CCWGG | 2 cut(s) | 275, 557 |
| EcoT38I | GRGCYC | 1 cut(s) | 21 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1298, 1330 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FauI | CCCGC | 1 cut(s) | 362 |
| FokI | GGATG | 3 cut(s) | 474, 521, 1294 |
| FriOI | GRGCYC | 1 cut(s) | 21 |
| FspBI | CTAG | 3 cut(s) | 609, 1082, 1151 |
| GsaI | CCCAGC | 1 cut(s) | 254 |
| HapII | CCGG | 3 cut(s) | 13, 425, 524 |
| HincII | GTYRAC | 3 cut(s) | 283, 1012, 1311 |
| HindII | GTYRAC | 3 cut(s) | 283, 1012, 1311 |
| HindIII | AAGCTT | 2 cut(s) | 470, 1226 |
| HinfI | GANTC | 5 cut(s) | 554, 926, 1125, 1136, 1264 |
| HpaI | GTTAAC | 1 cut(s) | 1311 |
| HpaII | CCGG | 3 cut(s) | 13, 425, 524 |
| HphI | GGTGA | 3 cut(s) | 209, 706, 1024 |
| Hpy166II | GTNNAC | 9 cut(s) | 26, 137, 143, 283, 880, 1012, 1301, 1311, 1363 |
| Hpy188I | TCNGA | 7 cut(s) | 508, 553, 591, 745, 931, 1269, 1334 |
| Hpy188III | TCNNGA | 5 cut(s) | 242, 807, 1000, 1082, 1343 |
| Hpy8I | GTNNAC | 9 cut(s) | 26, 137, 143, 283, 880, 1012, 1301, 1311, 1363 |
| Hpy99I | CGWCG | 1 cut(s) | 392 |
| HpyAV | CCTTC | 8 cut(s) | 82, 89, 122, 164, 586, 995, 1052, 1157 |
| HpyCH4III | ACNGT | 3 cut(s) | 820, 860, 1115 |
| HpyCH4IV | ACGT | 5 cut(s) | 139, 313, 390, 889, 1021 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 69, 354, 357, 418, 904 |
| HpyF3I | CTNAG | 4 cut(s) | 20, 46, 399, 948 |
| HpySE526I | ACGT | 5 cut(s) | 139, 313, 390, 889, 1021 |
| KspAI | GTTAAC | 1 cut(s) | 1311 |
| KspI | CCGCGG | 1 cut(s) | 358 |
| Kzo9I | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| Lsp1109I | GCAGC | 6 cut(s) | 360, 430, 670, 882, 1210, 1225 |
| LweI | GCATC | 1 cut(s) | 557 |
| MaeI | CTAG | 3 cut(s) | 609, 1082, 1151 |
| MaeII | ACGT | 5 cut(s) | 139, 313, 390, 889, 1021 |
| MaeIII | GTNAC | 3 cut(s) | 394, 632, 694 |
| MalI | GATC | 6 cut(s) | 33, 60, 210, 543, 1031, 1212 |
| MboI | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| MboII | GAAGA | 3 cut(s) | 97, 574, 1172 |
| MfeI | CAATTG | 1 cut(s) | 329 |
| MhlI | GDGCHC | 1 cut(s) | 21 |
| MluCI | AATT | 5 cut(s) | 200, 296, 329, 404, 739 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MnlI | CCTC | 8 cut(s) | 167, 310, 394, 526, 591, 709, 1059, 1224 |
| MseI | TTAA | 5 cut(s) | 68, 408, 720, 1110, 1310 |
| MspA1I | CMGCKG | 3 cut(s) | 254, 357, 443 |
| MspCI | CTTAAG | 1 cut(s) | 67 |
| MspI | CCGG | 3 cut(s) | 13, 425, 524 |
| MspR9I | CCNGG | 5 cut(s) | 13, 14, 277, 524, 559 |
| MunI | CAATTG | 1 cut(s) | 329 |
| Mva1269I | GAATGC | 2 cut(s) | 519, 827 |
| MvaI | CCWGG | 2 cut(s) | 277, 559 |
| MvnI | CGCG | 1 cut(s) | 357 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 69, 354, 357, 418, 904 |
| NciI | CCSGG | 3 cut(s) | 13, 14, 524 |
| NdeII | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| NmuCI | GTSAC | 2 cut(s) | 394, 694 |
| NspI | RCATGY | 4 cut(s) | 149, 381, 915, 1245 |
| PaeI | GCATGC | 2 cut(s) | 381, 1245 |
| PagI | TCATGA | 1 cut(s) | 999 |
| PciI | ACATGT | 2 cut(s) | 145, 911 |
| PctI | GAATGC | 2 cut(s) | 519, 827 |
| PfeI | GAWTC | 4 cut(s) | 926, 1125, 1136, 1264 |
| PflFI | GACNNNGTC | 1 cut(s) | 1338 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 35 |
| PfoI | TCCNGGA | 1 cut(s) | 557 |
| PleI | GAGTC | 1 cut(s) | 548 |
| PpsI | GAGTC | 1 cut(s) | 548 |
| PscI | ACATGT | 2 cut(s) | 145, 911 |
| Psp124BI | GAGCTC | 1 cut(s) | 21 |
| Psp6I | CCWGG | 2 cut(s) | 275, 557 |
| PspFI | CCCAGC | 1 cut(s) | 250 |
| PspGI | CCWGG | 2 cut(s) | 275, 557 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1338 |
| PsyI | GACNNNGTC | 1 cut(s) | 1338 |
| PvuII | CAGCTG | 1 cut(s) | 443 |
| RsaI | GTAC | 3 cut(s) | 872, 910, 1078 |
| RsaNI | GTAC | 3 cut(s) | 871, 909, 1077 |
| SacI | GAGCTC | 1 cut(s) | 21 |
| SacII | CCGCGG | 1 cut(s) | 358 |
| SaqAI | TTAA | 5 cut(s) | 68, 408, 720, 1110, 1310 |
| Sau3AI | GATC | 6 cut(s) | 31, 58, 208, 541, 1029, 1210 |
| ScaI | AGTACT | 1 cut(s) | 872 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 5 cut(s) | 13, 14, 277, 524, 559 |
| SduI | GDGCHC | 1 cut(s) | 21 |
| SfaNI | GCATC | 1 cut(s) | 557 |
| Sfr303I | CCGCGG | 1 cut(s) | 358 |
| SgrBI | CCGCGG | 1 cut(s) | 358 |
| SmaI | CCCGGG | 1 cut(s) | 14 |
| SmlI | CTYRAG | 3 cut(s) | 67, 338, 1294 |
| SmoI | CTYRAG | 3 cut(s) | 67, 338, 1294 |
| SphI | GCATGC | 2 cut(s) | 381, 1245 |
| Sse9I | AATT | 5 cut(s) | 200, 296, 329, 404, 739 |
| SsiI | CCGC | 6 cut(s) | 254, 289, 334, 355, 357, 422 |
| SspI | AATATT | 1 cut(s) | 790 |
| SspMI | CTAG | 3 cut(s) | 609, 1082, 1151 |
| SstI | GAGCTC | 1 cut(s) | 21 |
| StyD4I | CCNGG | 5 cut(s) | 11, 12, 275, 522, 557 |
| TaaI | ACNGT | 3 cut(s) | 820, 860, 1115 |
| TaiI | ACGT | 5 cut(s) | 142, 316, 393, 892, 1024 |
| TaqI | TCGA | 5 cut(s) | 387, 1123, 1216, 1289, 1342 |
| TasI | AATT | 5 cut(s) | 200, 296, 329, 404, 739 |
| TatI | WGTACW | 1 cut(s) | 870 |
| TauI | GCSGC | 4 cut(s) | 291, 337, 360, 424 |
| TfiI | GAWTC | 4 cut(s) | 926, 1125, 1136, 1264 |
| Tru1I | TTAA | 5 cut(s) | 68, 408, 720, 1110, 1310 |
| Tru9I | TTAA | 5 cut(s) | 68, 408, 720, 1110, 1310 |
| TscAI | CASTG | 2 cut(s) | 28, 139 |
| TseFI | GTSAC | 2 cut(s) | 394, 694 |
| TseI | GCWGC | 6 cut(s) | 348, 443, 658, 895, 1198, 1238 |
| Tsp45I | GTSAC | 2 cut(s) | 394, 694 |
| TspDTI | ATGAA | 4 cut(s) | 171, 752, 950, 1016 |
| TspGWI | ACGGA | 3 cut(s) | 1064, 1288, 1318 |
| TspMI | CCCGGG | 1 cut(s) | 12 |
| TspRI | CASTG | 2 cut(s) | 28, 139 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1338 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 35 |
| Vha464I | CTTAAG | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XbaI | TCTAGA | 1 cut(s) | 1081 |
| XceI | RCATGY | 4 cut(s) | 149, 381, 915, 1245 |
| XmaI | CCCGGG | 1 cut(s) | 12 |
| XspI | CTAG | 3 cut(s) | 609, 1082, 1151 |
| ZrmI | AGTACT | 1 cut(s) | 872 |