Rh1AG433000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000150
Physical Location & Seq
Reverse (-)
65926984 .. 65927232
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG433000.1

Sequence Viewer

Length: 249 bp
ATGGGTCATCCCGATTGTCATGATGGTTCGCTCCAAGAACAAGAAGAAGAGAAGCGTCTATCTTGTGAGGTCTGTCACAGCCGCGGTCTACAAAGACATAAGAAGTATGTGCATGAGCTTCATTCTTGTGAGACATTTGAACATCCGGATTTAAAAAAGAAGAAGAAGAATTCTCTCTCTCCTCACCCGGCTGCGAGCGACCAGGTATCACCTTTTGTGTTGATAGTTTTGAAAAAGATTGTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.41

Weight (kDa)

7.76

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 2 cut(s) 82, 84
AcsI RAATTY 1 cut(s) 169
AgsI TTSAA 2 cut(s) 140, 232
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 176, 201
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 2 cut(s) 82, 192
BlsI GCNGC 2 cut(s) 83, 193
Bme1390I CCNGG 2 cut(s) 188, 203
BmrFI CCNGG 2 cut(s) 188, 203
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 145
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 7, 142
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 146, 188
BsmAI GTCTC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 145
BspACI CCGC 2 cut(s) 82, 84
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 7, 142
BstFNI CGCG 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 186, 201
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 7, 142
Cac8I GCNNGC 1 cut(s) 196
CciI TCATGA 1 cut(s) 19
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 201
CviAII CATG 2 cut(s) 20, 113
CviJI RGCY 3 cut(s) 81, 118, 191
CviKI_1 RGCY 3 cut(s) 81, 118, 191
DraI TTTAAA 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 23, 116
FaiI YATR 4 cut(s) 21, 99, 108, 114
FatI CATG 2 cut(s) 19, 112
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 82, 192
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 82, 192
GluI GCNGC 2 cut(s) 82, 192
HapII CCGG 2 cut(s) 146, 188
HgaI GACGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 23, 116
HpaII CCGG 2 cut(s) 146, 188
HphI GGTGA 2 cut(s) 176, 201
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 3 cut(s) 11, 20, 146
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 2 cut(s) 23, 116
Kpn2I TCCGGA 1 cut(s) 145
KspI CCGCGG 1 cut(s) 85
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 4 cut(s) 159, 188, 201, 215
Lsp1109I GCAGC 1 cut(s) 178
MabI ACCWGGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 74, 241
MboII GAAGA 5 cut(s) 56, 59, 172, 175, 178
MluCI AATT 1 cut(s) 169
MnlI CCTC 2 cut(s) 61, 192
MroI TCCGGA 1 cut(s) 145
MseI TTAA 2 cut(s) 152, 247
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 2 cut(s) 146, 188
MspR9I CCNGG 2 cut(s) 188, 203
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 84
NciI CCSGG 1 cut(s) 188
NlaIII CATG 2 cut(s) 23, 116
NmuCI GTSAC 2 cut(s) 74, 241
PagI TCATGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 83, 193
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 126
SacII CCGCGG 1 cut(s) 85
SaqAI TTAA 2 cut(s) 152, 247
SatI GCNGC 2 cut(s) 82, 192
ScrFI CCNGG 2 cut(s) 188, 203
SetI ASST 4 cut(s) 72, 120, 207, 214
SexAI ACCWGGT 1 cut(s) 201
Sfr303I CCGCGG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 82, 84
StyD4I CCNGG 2 cut(s) 186, 201
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 152, 247
Tru9I TTAA 2 cut(s) 152, 247
TseFI GTSAC 2 cut(s) 74, 241
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 2 cut(s) 74, 241
TspDTI ATGAA 1 cut(s) 110
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.