MD16G1080700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000150
Physical Location & Seq
Reverse (-)
5683653 .. 5685857
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1080700.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGATACCACTTCTGAAACATTCCCTGCCCCTAAAACACCTAAGCCGCTCGGGTCTGTTGTCTGTGCGTACGGACACATCTACCATATTGCAGATCCCTTGTCCGGAACTCCAGAATGCAACTCAAAGATTCCGAACCTATCCTTTGCGCGTTATAAACCTGGTCAGGAAACTTGGGAGACACTGCCTCATTTTCCGTATTACATAGAGTGCCGCTTTATGTTTATATGTGGTTATGCTGTTTGTCGCGGCTGGATTTTGTTTTCCCTGCGTCACATGAATGGGTCAAATTACAAATCTATGCTTTTCATATCAAGACACAAGAATGGCATTGAGTTACATCAGGTCACACTGGCTTCGTTGGGAGGGCCGTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

8.63

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 49
AccII CGCG 2 cut(s) 151, 249
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 3 cut(s) 47, 214, 249
AclWI GGATC 1 cut(s) 89
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 104
AjnI CCWGG 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 104
AoxI GGCC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 50
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 173
BisI GCNGC 3 cut(s) 47, 214, 250
BlsI GCNGC 3 cut(s) 48, 215, 251
Bme1390I CCNGG 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 104
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 151, 249
BshFI GGCC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 105
BsiWI CGTACG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 47, 214, 249
BspANI GGCC 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 104
BspFNI CGCG 2 cut(s) 151, 249
BspPI GGATC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 371
BstFNI CGCG 2 cut(s) 151, 249
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 2 cut(s) 151, 249
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 371
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 182, 350
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 277
CviJI RGCY 4 cut(s) 46, 252, 356, 370
CviKI_1 RGCY 4 cut(s) 46, 252, 356, 370
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 280
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 47, 214, 250
Fsp4HI GCNGC 3 cut(s) 47, 214, 250
GlaI GCGC 1 cut(s) 150
GluI GCNGC 3 cut(s) 47, 214, 250
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 370
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 16, 135
Hpy188III TCNNGA 4 cut(s) 105, 113, 167, 315
HpyCH4V TGCA 2 cut(s) 92, 120
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 104
Kzo9I GATC 1 cut(s) 94
MabI ACCWGGT 1 cut(s) 160
MaeIII GTNAC 3 cut(s) 272, 336, 346
MalI GATC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 94
MflI RGATCY 1 cut(s) 94
MluCI AATT 1 cut(s) 289
MnlI CCTC 2 cut(s) 198, 359
MroI TCCGGA 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 279, 324
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 2 cut(s) 151, 249
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 280
NmuCI GTSAC 2 cut(s) 272, 346
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 69
PkrI GCNGC 3 cut(s) 48, 215, 251
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspLI CGTACG 1 cut(s) 69
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 279, 324
SatI GCNGC 3 cut(s) 47, 214, 250
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 162
SetI ASST 4 cut(s) 43, 141, 163, 348
SexAI ACCWGGT 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 279, 324
Sse9I AATT 1 cut(s) 289
SsiI CCGC 3 cut(s) 47, 214, 249
StyD4I CCNGG 1 cut(s) 160
TasI AATT 1 cut(s) 289
TauI GCSGC 3 cut(s) 49, 216, 252
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 2 cut(s) 189, 357
TseFI GTSAC 2 cut(s) 272, 346
Tsp45I GTSAC 2 cut(s) 272, 346
TspDTI ATGAA 2 cut(s) 293, 298
TspGWI ACGGA 2 cut(s) 87, 186
TspRI CASTG 2 cut(s) 189, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.