Rh1BG392700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000150
Physical Location & Seq
Forward (+)
51845335 .. 51845676
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG392700.1

Sequence Viewer

Length: 342 bp
ATGGAGACGATAGAAAACAATCGGGAAGCTGAATCTGTATTTGTTATGGTGGAGTTCGATCAAGATGATTCCTACACTGGTGGTGTATACGAAATCAAACTTGACCAACTTCAGCAACTCGAGCATGGTAAATTTGTGGGCGGATTTAGGGTTGACCCTTCAACTCTCGAACCTATATTGAAGTTCTTTGATAAGAGTTGGAAGATGGAGGGGTTCTGTTCATTTGATGGTGCCAGATTTGGCGGCCTATCCAAGTTATATCTTATGGTAAATCAAATCCCATGGCCTTATCTCAAGCCCGTCATACCAAGCATGCATTTTTCTTCGACACATCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.0

Weight (kDa)

4.9

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 87
AciI CCGC 2 cut(s) 141, 243
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 162, 181
AluBI AGCT 2 cut(s) 29, 338
AluI AGCT 2 cut(s) 29, 338
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 2 cut(s) 244, 284
ApoI RAATTY 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 230
BccI CCATC 2 cut(s) 199, 221
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 82
BshFI GGCC 2 cut(s) 246, 286
BshNI GGYRCC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 119
BsnI GGCC 2 cut(s) 246, 286
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 141, 243
BspANI GGCC 2 cut(s) 246, 286
BspLI GGNNCC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 58
BssNAI GTATAC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 281
Bst1107I GTATAC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 281
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 316
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 246, 286
BtgI CCRYGG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 314
CviAII CATG 3 cut(s) 125, 282, 313
CviJI RGCY 5 cut(s) 29, 246, 286, 298, 338
CviKI_1 RGCY 5 cut(s) 29, 246, 286, 298, 338
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 3 cut(s) 128, 285, 316
FaiI YATR 9 cut(s) 47, 88, 126, 176, 259, 266, 283, 305, 314
FatI CATG 3 cut(s) 124, 281, 312
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 2 cut(s) 246, 286
Hin1II CATG 3 cut(s) 128, 285, 316
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 2 cut(s) 32, 68
Hpy166II GTNNAC 2 cut(s) 88, 154
Hpy188III TCNNGA 3 cut(s) 23, 62, 167
Hpy8I GTNNAC 2 cut(s) 88, 154
HpyAV CCTTC 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 3 cut(s) 128, 285, 316
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 2 cut(s) 63, 247
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 214, 315
MluCI AATT 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 1 cut(s) 202
Mph1103I ATGCAT 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 281
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 128, 285, 316
NlaIV GGNNCC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 316
PaeI GCATGC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 2 cut(s) 32, 68
PkrI GCNGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 232
PspXI VCTCGAGB 1 cut(s) 119
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 1 cut(s) 58
SetI ASST 3 cut(s) 31, 175, 340
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 119, 293
SmoI CTYRAG 2 cut(s) 119, 293
SphI GCATGC 1 cut(s) 316
Sse9I AATT 1 cut(s) 131
SsiI CCGC 2 cut(s) 141, 243
StyI CCWWGG 1 cut(s) 281
TaqI TCGA 4 cut(s) 57, 120, 168, 326
TasI AATT 1 cut(s) 131
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 2 cut(s) 32, 68
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 82
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.