Rorug01G0412500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000150
Physical Location & Seq
Reverse (-)
51734069 .. 51734479
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0412500.1

Sequence Viewer

Length: 336 bp
ATGATGAGGCCAGGATTATTTGGTTTGATGGTATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCGGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACTCATCTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.12

Weight (kDa)

8.62

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 105 3.5e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 278, 310
AjnI CCWGG 1 cut(s) 10
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 2 cut(s) 121, 235
AluI AGCT 2 cut(s) 121, 235
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 12
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 98, 239
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 98, 239
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 136, 237
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 140, 183
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 136, 237
CviAII CATG 1 cut(s) 333
CviJI RGCY 4 cut(s) 10, 99, 121, 235
CviKI_1 RGCY 4 cut(s) 10, 99, 121, 235
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 336
FaiI YATR 5 cut(s) 34, 172, 214, 222, 334
FaqI GGGAC 2 cut(s) 98, 239
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 336
HindIII AAGCTT 2 cut(s) 119, 233
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 272, 282
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 252, 259
HpyCH4V TGCA 2 cut(s) 138, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 183
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 252, 259
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 24, 84, 113, 138
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 252, 259
MaeIII GTNAC 3 cut(s) 148, 193, 223
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 273
MnlI CCTC 3 cut(s) 103, 175, 309
MseI TTAA 1 cut(s) 267
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 140, 183
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 12
SetI ASST 5 cut(s) 123, 237, 255, 262, 283
SfaNI GCATC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 255, 262
TasI AATT 1 cut(s) 273
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 193
TspRI CASTG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.