Rroxscaffold_5G00348380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000150
Physical Location & Seq
Forward (+)
20495930 .. 20500463
4534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348380.1

Sequence Viewer

Length: 261 bp
ATGGTGGGGCGTGAGGACAAGGAATTAAGAGAAGAAGTCCGATTTCGAGGGGTTGGAAGGGGCATAAAACGACCTCTATTCGACGGCCTCTATTCATCCTCTTCGTTCTACGCCTCCGACCAAAACCTAAATCCTCTTGGTTCTTCGAATCCAACCGAACTCGACGCCTCGTCCTCCTTCTTTTTCGAGTCGGACAGCTCCGTGCTCCAAGACGGTGAACGGGATCGGAGTTCGAGGCCCGCCGTTTCGGAGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

4.9

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AclWI GGATC 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 165
AhdI GACNNNNNGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 231
AoxI GGCC 2 cut(s) 85, 236
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 207
BceAI ACGGC 2 cut(s) 100, 227
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 165
BseGI GGATG 1 cut(s) 95
BshFI GGCC 2 cut(s) 87, 238
BsiHKAI GWGCWC 1 cut(s) 207
BsnI GGCC 2 cut(s) 87, 238
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 87, 238
BspPI GGATC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 146
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 240
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 87, 238
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 237
CseI GACGC 1 cut(s) 173
CviJI RGCY 3 cut(s) 87, 198, 238
CviKI_1 RGCY 3 cut(s) 87, 198, 238
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 106
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 106
FaiI YATR 1 cut(s) 65
FauI CCCGC 1 cut(s) 247
FokI GGATG 1 cut(s) 82
HaeIII GGCC 2 cut(s) 87, 238
HgaI GACGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 165
HinfI GANTC 2 cut(s) 148, 188
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 5 cut(s) 41, 118, 193, 228, 250
Hpy8I GTNNAC 1 cut(s) 218
Hpy99I CGWCG 2 cut(s) 86, 167
HpyAV CCTTC 2 cut(s) 51, 187
HpyCH4III ACNGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 203, 210
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 44, 93, 135
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 4 cut(s) 34, 141, 171, 176
MseI TTAA 1 cut(s) 26
NdeII GATC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 146
PfeI GAWTC 1 cut(s) 148
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 76, 129, 200
SfuI TTCGAA 1 cut(s) 146
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 240
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 6 cut(s) 46, 81, 146, 162, 186, 233
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.