Prupe.5G190200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000150
Physical Location & Seq
Reverse (-)
15598409 .. 15600795
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G190200.1

Sequence Viewer

Length: 510 bp
ATGTTTAAGGTGGACGAGATTATAGCATACTTCTTGAAGAGGAAGGTAAATGATGACTGTGATATTGCATATTCACTAGTGCAACTGTATAAATTGAAAGGCCTTGAGATTGCGGATCCCCCATTGCAATTTGGTGAATTTGTGACTGACTATTTGGTTCATCTGGGGAATCAAGACTTAGTTCATGTTAAGACTGGCGCTAATGAAGAATGTGATGAGGTTCAACATCTTTGTATCACCACGTTTCAAATTGTCCAAGAAGGAACAAGACATATGATCGAGACCTTACAATCAATTGTTCTTCCTGTGGATATTGAGGCCGGTAATTGGTTCATACTTACGTTCGGCTTTACTCCAGAGTGCGAGGATTATGAACCCGTAGAAAGAGAGAGTGCAACTAACATGAAACAAGAAGATGAAATCACTCTGGATGATAGTTCTTTTATGTGGGAGGAAGAAGCCAAACAGGAAATAACTGCTAGACAGCCAGAAAAAGCCTCCATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

4.3

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 110, 123
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 5 cut(s) 37, 97, 224, 248, 506
AhlI ACTAGT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 110, 123
AoxI GGCC 2 cut(s) 100, 318
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 146, 229
BamHI GGATCC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 2 cut(s) 77, 480
BfoI RGCGCY 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 199
BshFI GGCC 2 cut(s) 102, 320
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 2 cut(s) 102, 320
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 115, 276
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 102, 320
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 2 cut(s) 110, 123
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 320
BssMI GATC 2 cut(s) 115, 276
Bst4CI ACNGT 2 cut(s) 59, 87
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 118, 279
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 115, 276
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 102, 320
BtsCI GGATG 1 cut(s) 436
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 320
CviAII CATG 2 cut(s) 185, 403
CviJI RGCY 6 cut(s) 102, 320, 348, 461, 487, 497
CviKI_1 RGCY 6 cut(s) 102, 320, 348, 461, 487, 497
DdeI CTNAG 1 cut(s) 178
DpnI GATC 2 cut(s) 117, 278
DpnII GATC 2 cut(s) 115, 276
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 188, 406
FatI CATG 2 cut(s) 184, 402
FauNDI CATATG 1 cut(s) 273
FokI GGATG 1 cut(s) 443
FspBI CTAG 2 cut(s) 77, 480
GlaI GCGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 2 cut(s) 102, 320
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 188, 406
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 146, 229
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 5 cut(s) 34, 173, 280, 356, 428
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 37, 254
HpyCH4III ACNGT 2 cut(s) 59, 87
HpyCH4IV ACGT 2 cut(s) 242, 341
HpyCH4V TGCA 4 cut(s) 68, 82, 127, 395
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 2 cut(s) 242, 341
Hsp92II CATG 2 cut(s) 188, 406
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 115, 276
LpnPI CCDG 8 cut(s) 149, 180, 318, 334, 369, 413, 452, 501
MaeI CTAG 2 cut(s) 77, 480
MaeII ACGT 2 cut(s) 242, 341
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 117, 278
MboI GATC 2 cut(s) 115, 276
MboII GAAGA 5 cut(s) 49, 218, 293, 425, 467
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 115
MluCI AATT 6 cut(s) 92, 128, 137, 249, 294, 325
MnlI CCTC 6 cut(s) 33, 211, 310, 358, 445, 508
MseI TTAA 2 cut(s) 6, 189
MspI CCGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 294
NdeI CATATG 1 cut(s) 273
NdeII GATC 2 cut(s) 115, 276
NlaIII CATG 2 cut(s) 188, 406
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 142
PceI AGGCCT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 115
SaqAI TTAA 2 cut(s) 6, 189
Sau3AI GATC 2 cut(s) 115, 276
SetI ASST 6 cut(s) 12, 48, 222, 245, 287, 344
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 6 cut(s) 92, 128, 137, 249, 294, 325
SseBI AGGCCT 1 cut(s) 102
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 77, 480
StuI AGGCCT 1 cut(s) 102
TaaI ACNGT 2 cut(s) 59, 87
TaiI ACGT 2 cut(s) 245, 344
TaqI TCGA 1 cut(s) 279
TasI AATT 6 cut(s) 92, 128, 137, 249, 294, 325
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 6, 189
Tru9I TTAA 2 cut(s) 6, 189
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 7 cut(s) 149, 173, 219, 322, 387, 419, 432
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 77, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.