RLG00000002641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000150
Physical Location & Seq
Forward (+)
37408847 .. 37410030
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002641

Sequence Viewer

Length: 1077 bp
ATGCTAAAGCAGGCAGAAGCAAGCTCAGTCTTGGCAGTGGTGACTTATTTTGAGGGAACCTGCTTTGGTGCATTATTTGAAGTAAAATTTGATGGACAAGGTAAAGAAGGTGCAGCAACTCATGAAACCCAACCAGTACTTGAAACTGTATCCCGATTCACCACAAAGGATTTTGGTCGCGGAATGTGGAAATTTTGTACCTTGGGTGCCAACTTATATATTTTGCCAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTCCCCAAATCCAGTGGACGTATTTTCGACATCAAGGCTGGGAGAGTGGTGTCATCAATCGAACCCCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGCACATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATCTGATGTACCAGATCCATCTTTCGAGCGGTATGACCCTACCACTCAGTCTTGGCAGAAGCTGTGCTCTTTTCCATATTCTGATGAACATGGTAAAACAGAGATACAAGGTTATGCCGTTTGTGATGAAATCTTATTGTTTAGTATATGTGGCTGCAAGGAAAACTATGGTGCACTGTGGGCTTATGATGTAATTAAAAATAAGTGGTGTCTGGTCCAAGTTGAGAATACAGGTTGCTATTTCCGAAGAAGGGCCGTGGTTGTGGACAAGACTATCTATGCCTTATCCAAATTGGACATGGTTGTTGTGGCATTCTCTATTACAAGCCACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTAAAGTTGGATTTTCCACAGGTTATAGACTGGAGAAGGGATCAGCATTTGGTTCATTTGGGTAACCTGGTCTTTTATCTTGTCCAGAGTGGCTTCAATGACGAAGTTGATGTTCGTCAACCTGTTTTTATCACCAAATTTCAGATTGTGGGAGGAAGCGAAATCAATTTCATAAGTTCAACACTTTGTGAGGTGGATATCAAGGATACTGGGCCATTTCGTGTTCAATTATGCTTCACGCCAGAGGGTGAGGATGTCACACTCATAGAAAAAGAGACTGCTACCTCCATCAACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.09

Weight (kDa)

5.04

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 233
AccBSI CCGCTC 1 cut(s) 433
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 180, 433
AclWI GGATC 3 cut(s) 386, 413, 825
AcsI RAATTY 4 cut(s) 86, 191, 375, 914
AdeI CACNNNGTG 1 cut(s) 965
AfaI GTAC 3 cut(s) 138, 199, 414
AfiI CCNNNNNNNGG 3 cut(s) 233, 655, 742
AgsI TTSAA 6 cut(s) 80, 143, 765, 874, 957, 1004
AjnI CCWGG 1 cut(s) 843
AluBI AGCT 4 cut(s) 24, 335, 466, 759
AluI AGCT 4 cut(s) 24, 335, 466, 759
Alw21I GWGCWC 2 cut(s) 473, 580
Alw26I GTCTC 1 cut(s) 1046
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 3 cut(s) 386, 413, 825
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 2 cut(s) 657, 989
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 113, 558
ApoI RAATTY 4 cut(s) 86, 191, 375, 914
AspS9I GGNCC 4 cut(s) 236, 619, 657, 989
AsuHPI GGTGA 4 cut(s) 52, 151, 901, 1037
AvaII GGWCC 2 cut(s) 236, 619
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 473, 580
BbvI GCAGC 2 cut(s) 125, 545
BccI CCATC 4 cut(s) 86, 224, 430, 1073
BceAI ACGGC 2 cut(s) 506, 644
BciT130I CCWGG 1 cut(s) 845
BciVI GTATCC 2 cut(s) 160, 976
BcoDI GTCTC 1 cut(s) 1046
BfuAI ACCTGC 1 cut(s) 68
BfuI GTATCC 2 cut(s) 160, 976
BisI GCNGC 2 cut(s) 114, 559
BlsI GCNGC 2 cut(s) 115, 560
BmcAI AGTACT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 845
Bme18I GGWCC 2 cut(s) 236, 619
BmgT120I GGNCC 4 cut(s) 236, 619, 657, 989
BmiI GGNNCC 2 cut(s) 58, 208
BmrFI CCNGG 1 cut(s) 845
BmrI ACTGGG 1 cut(s) 996
BmuI ACTGGG 1 cut(s) 996
BpmI CTGGAG 1 cut(s) 829
BsaJI CCNNGG 2 cut(s) 201, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 655, 742
Bse1I ACTGG 4 cut(s) 134, 276, 812, 991
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 2 cut(s) 201, 660
BseGI GGATG 1 cut(s) 1036
BseLI CCNNNNNNNGG 3 cut(s) 233, 655, 742
BseMII CTCAG 2 cut(s) 39, 464
BseNI ACTGG 4 cut(s) 134, 276, 812, 991
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 2 cut(s) 125, 545
BseYI CCCAGC 2 cut(s) 302, 331
BsgI GTGCAG 2 cut(s) 132, 348
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 659, 991
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 473, 580
BslI CCNNNNNNNGG 3 cut(s) 233, 655, 742
BsmAI GTCTC 1 cut(s) 1046
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 2 cut(s) 659, 991
Bsp1286I GDGCHC 2 cut(s) 473, 580
Bsp143I GATC 3 cut(s) 391, 418, 817
BspACI CCGC 2 cut(s) 180, 433
BspANI GGCC 2 cut(s) 659, 991
BspCNI CTCAG 2 cut(s) 38, 463
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 58, 208
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 3 cut(s) 386, 413, 825
BspT107I GGYRCC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 433
BsrI ACTGG 4 cut(s) 134, 276, 812, 991
BssECI CCNNGG 2 cut(s) 201, 660
BssMI GATC 3 cut(s) 391, 418, 817
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 2 cut(s) 148, 582
BstC8I GCNNGC 2 cut(s) 12, 22
BstDEI CTNAG 2 cut(s) 25, 450
BstDSI CCRYGG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 839
BstF5I GGATG 1 cut(s) 1036
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 3 cut(s) 394, 421, 820
BstMAI GTCTC 1 cut(s) 1046
BstMBI GATC 3 cut(s) 391, 418, 817
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 1 cut(s) 845
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 125, 545
BstX2I RGATCY 2 cut(s) 391, 418
BstYI RGATCY 2 cut(s) 391, 418
BsuI GTATCC 2 cut(s) 160, 976
BsuRI GGCC 2 cut(s) 659, 991
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 1036
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 42, 283, 578
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 12, 22
CaiI CAGNNNCTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 121
Cfr13I GGNCC 4 cut(s) 236, 619, 657, 989
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 3 cut(s) 137, 198, 413
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 6 cut(s) 122, 253, 356, 368, 494, 703
CviQI GTAC 3 cut(s) 137, 198, 413
DdeI CTNAG 2 cut(s) 25, 450
DpnI GATC 3 cut(s) 393, 420, 819
DpnII GATC 3 cut(s) 391, 418, 817
DraIII CACNNNGTG 1 cut(s) 965
Eco130I CCWWGG 1 cut(s) 201
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 2 cut(s) 236, 619
Eco91I GGTNACC 1 cut(s) 839
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 843
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 6 cut(s) 125, 256, 359, 371, 497, 706
FatI CATG 6 cut(s) 121, 252, 355, 367, 493, 702
Fnu4HI GCNGC 2 cut(s) 114, 559
FokI GGATG 1 cut(s) 1043
Fsp4HI GCNGC 2 cut(s) 114, 559
GluI GCNGC 2 cut(s) 114, 559
GsaI CCCAGC 2 cut(s) 306, 335
GsuI CTGGAG 1 cut(s) 829
HaeIII GGCC 2 cut(s) 659, 991
Hin1II CATG 6 cut(s) 125, 256, 359, 371, 497, 706
HincII GTYRAC 1 cut(s) 896
HindII GTYRAC 1 cut(s) 896
HinfI GANTC 1 cut(s) 156
HphI GGTGA 4 cut(s) 52, 151, 901, 1037
Hpy166II GTNNAC 4 cut(s) 281, 578, 670, 896
Hpy188I TCNGA 5 cut(s) 391, 409, 487, 650, 921
Hpy188III TCNNGA 4 cut(s) 122, 153, 239, 862
Hpy8I GTNNAC 4 cut(s) 281, 578, 670, 896
HpyAV CCTTC 4 cut(s) 101, 648, 740, 807
HpyCH4III ACNGT 2 cut(s) 148, 582
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 71, 113, 365, 561, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 2 cut(s) 25, 450
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 6 cut(s) 125, 256, 359, 371, 497, 706
Kzo9I GATC 3 cut(s) 391, 418, 817
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 2 cut(s) 125, 545
MabI ACCWGGT 1 cut(s) 843
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 3 cut(s) 40, 839, 1033
MalI GATC 3 cut(s) 393, 420, 819
MbiI CCGCTC 1 cut(s) 433
MboI GATC 3 cut(s) 391, 418, 817
MboII GAAGA 1 cut(s) 663
MflI RGATCY 2 cut(s) 391, 418
MhlI GDGCHC 2 cut(s) 473, 580
MluCI AATT 8 cut(s) 86, 191, 375, 597, 695, 914, 943, 1004
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 7 cut(s) 46, 736, 923, 961, 1015, 1021, 1072
MseI TTAA 2 cut(s) 600, 779
MslI CAYNNNNRTG 2 cut(s) 257, 738
MspR9I CCNGG 1 cut(s) 845
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 845
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 3 cut(s) 391, 418, 817
NlaIII CATG 6 cut(s) 125, 256, 359, 371, 497, 706
NlaIV GGNNCC 2 cut(s) 58, 208
NmuCI GTSAC 2 cut(s) 40, 1033
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 2 cut(s) 115, 560
Psp6I CCWGG 1 cut(s) 843
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 2 cut(s) 302, 331
PspGI CCWGG 1 cut(s) 843
PspN4I GGNNCC 2 cut(s) 58, 208
PspPI GGNCC 4 cut(s) 236, 619, 657, 989
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 391, 418
RsaI GTAC 3 cut(s) 138, 199, 414
RsaNI GTAC 3 cut(s) 137, 198, 413
RseI CAYNNNNRTG 2 cut(s) 257, 738
SaqAI TTAA 2 cut(s) 600, 779
SatI GCNGC 2 cut(s) 114, 559
Sau3AI GATC 3 cut(s) 391, 418, 817
Sau96I GGNCC 4 cut(s) 236, 619, 657, 989
ScaI AGTACT 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 845
SduI GDGCHC 2 cut(s) 473, 580
SexAI ACCWGGT 1 cut(s) 843
SinI GGWCC 2 cut(s) 236, 619
SmiMI CAYNNNNRTG 2 cut(s) 257, 738
Sse9I AATT 8 cut(s) 86, 191, 375, 597, 695, 914, 943, 1004
SsiI CCGC 2 cut(s) 180, 433
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 148, 582
TaiI ACGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 291, 324, 429
TasI AATT 8 cut(s) 86, 191, 375, 597, 695, 914, 943, 1004
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 600, 779
Tru9I TTAA 2 cut(s) 600, 779
TscAI CASTG 3 cut(s) 42, 283, 585
TseFI GTSAC 2 cut(s) 40, 1033
TseI GCWGC 2 cut(s) 113, 558
Tsp45I GTSAC 2 cut(s) 40, 1033
TspDTI ATGAA 5 cut(s) 138, 504, 546, 821, 937
TspRI CASTG 3 cut(s) 42, 283, 585
Van91I CCANNNNNTGG 1 cut(s) 233
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 236, 619
XapI RAATTY 4 cut(s) 86, 191, 375, 914
XcmI CCANNNNNNNNNTGG 2 cut(s) 339, 700
ZrmI AGTACT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.