Rh2DG563700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000150
Physical Location & Seq
Forward (+)
79278951 .. 79279742
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG563700.1

Sequence Viewer

Length: 792 bp
ATGACCGGTTATGCCGTTTGTTATGGATATATACTGTTGTCCATGCAAACTGAGAAGAAATATGAAGCGATGGCTTTTCATATTCATAGCAGAGCATGGCACAAGGTGAAAACTAGTTCAGAGAATCCTTATTATTATCCTTTCTACGGGAGGGCAGTGGTTTTGGATAGTACTATCTATGCCTTGGCGCATAATCTTGATTTGGTTCTGGTCTTCTCTTTCTGGTGGGATTCAGACAAGGATGGTGACATTGCAAAGCGTCGACATTTTCTGGGTACTCCATTGTCTCTGTTAATAATGGCCAAGTGTCATCTGCCGCGCAGGTTACTAGGGGATAGAACTCAGAATTTGGTTCATTTAGGAGCTCGATACTTTAGTGTTGTGCAGACTGGTCAGAACAATGATTCTTCCGAGTATCAGTATCTGTGTGCAACGACCTTTAGAATTGCCGGTGATGGGCAAGAAATGCATTTCAAGACTGTTCGCTCACCCGTTTTTCACGTCGCGATCGAAGGGAATGATGAATTTGAAGTTCAGTTCAGCTTCACACCAGATTGCAATGACATTGAACCAGTGGAAGAACAGTACAGTGTGTCTAGTGCATTGGTTGAAAGGGAAAGTGCGTGGACTTCGGAGGTCAAAGAAGACTTCTTTTCCTTCCCAACTGGTCCTAAACTGGGATTAGAGGCATTTAGAGCCAAGAAAGAAGACGAAAAAAAAGTGTTCATCTCCACTACTTCACCTGAGACTCCTCTCCTCTCCAAAGGTTCAAAAAAGAAGAAAAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

30.12

Weight (kDa)

6.76

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 262
AccII CGCG 2 cut(s) 319, 506
AciI CCGC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 346, 524
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 3 cut(s) 172, 277, 587
AfiI CCNNNNNNNGG 3 cut(s) 146, 456, 677
AgeI ACCGGT 1 cut(s) 5
AgsI TTSAA 5 cut(s) 475, 530, 569, 611, 771
AhlI ACTAGT 1 cut(s) 113
AjiI CACGTC 1 cut(s) 502
AluBI AGCT 2 cut(s) 365, 543
AluI AGCT 2 cut(s) 365, 543
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 291, 740
AlwNI CAGNNNCTG 1 cut(s) 424
AoxI GGCC 1 cut(s) 300
ApoI RAATTY 2 cut(s) 346, 524
AsiGI ACCGGT 1 cut(s) 5
AspLEI GCGC 2 cut(s) 190, 321
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 5 cut(s) 118, 257, 464, 480, 732
AvaII GGWCC 1 cut(s) 668
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BalI TGGCCA 1 cut(s) 302
BanII GRGCYC 1 cut(s) 367
BbsI GAAGAC 3 cut(s) 205, 651, 714
Bbv12I GWGCWC 1 cut(s) 367
BccI CCATC 3 cut(s) 64, 236, 449
BcoDI GTCTC 2 cut(s) 291, 740
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 3 cut(s) 114, 329, 597
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 668
BmrI ACTGGG 1 cut(s) 686
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 3 cut(s) 205, 651, 714
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 456, 677
Bse118I RCCGGY 2 cut(s) 5, 449
Bse1I ACTGG 4 cut(s) 394, 572, 670, 681
Bse3DI GCAATG 2 cut(s) 249, 565
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 146, 456, 677
BseMI GCAATG 2 cut(s) 249, 565
BseMII CTCAG 3 cut(s) 42, 356, 735
BseNI ACTGG 4 cut(s) 394, 572, 670, 681
BseRI GAGGAG 2 cut(s) 741, 746
BsgI GTGCAG 1 cut(s) 404
Bsh1236I CGCG 2 cut(s) 319, 506
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 6, 450
BslI CCNNNNNNNGG 3 cut(s) 146, 456, 677
BsmAI GTCTC 2 cut(s) 291, 740
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 507
Bsp68I TCGCGA 1 cut(s) 506
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 3 cut(s) 43, 355, 736
BspFNI CGCG 2 cut(s) 319, 506
BspMI ACCTGC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 249, 565
BsrFI RCCGGY 2 cut(s) 5, 449
BsrI ACTGG 4 cut(s) 394, 572, 670, 681
BssAI RCCGGY 2 cut(s) 5, 449
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 4 cut(s) 36, 481, 585, 590
BstAPI GCANNNNNTGC 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 51, 342, 744
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 2 cut(s) 319, 506
BstHHI GCGC 2 cut(s) 190, 321
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 2 cut(s) 291, 740
BstMBI GATC 1 cut(s) 507
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 2 cut(s) 466, 695
BstUI CGCG 2 cut(s) 319, 506
BstV2I GAAGAC 3 cut(s) 205, 651, 714
BsuRI GGCC 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 83
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 162, 579, 595
BtuMI TCGCGA 1 cut(s) 506
BveI ACCTGC 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 2 cut(s) 190, 321
Cfr10I RCCGGY 2 cut(s) 5, 449
Cfr13I GGNCC 1 cut(s) 668
CseI GACGC 1 cut(s) 248
Csp6I GTAC 3 cut(s) 171, 276, 586
CspAI ACCGGT 1 cut(s) 5
CviAII CATG 2 cut(s) 43, 96
CviJI RGCY 5 cut(s) 74, 302, 365, 543, 698
CviKI_1 RGCY 5 cut(s) 74, 302, 365, 543, 698
CviQI GTAC 3 cut(s) 171, 276, 586
DdeI CTNAG 3 cut(s) 51, 342, 744
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
DraIII CACNNNGTG 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 46, 99
FatI CATG 2 cut(s) 42, 95
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 3 cut(s) 114, 329, 597
GlaI GCGC 2 cut(s) 189, 320
GluI GCNGC 1 cut(s) 317
HaeIII GGCC 1 cut(s) 302
HapII CCGG 2 cut(s) 6, 450
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 190, 321
Hin1II CATG 2 cut(s) 46, 99
Hin6I GCGC 2 cut(s) 188, 319
HinP1I GCGC 2 cut(s) 188, 319
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 4 cut(s) 124, 230, 404, 748
HpaII CCGG 2 cut(s) 6, 450
HphI GGTGA 5 cut(s) 118, 257, 464, 480, 732
Hpy166II GTNNAC 2 cut(s) 263, 627
Hpy188I TCNGA 6 cut(s) 121, 235, 345, 396, 412, 634
Hpy188III TCNNGA 3 cut(s) 197, 475, 505
Hpy8I GTNNAC 2 cut(s) 263, 627
Hpy99I CGWCG 2 cut(s) 264, 506
HpyAV CCTTC 2 cut(s) 506, 667
HpyCH4III ACNGT 4 cut(s) 36, 481, 585, 590
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 7 cut(s) 46, 254, 385, 431, 469, 558, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 695
HpyF3I CTNAG 3 cut(s) 51, 342, 744
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 2 cut(s) 46, 99
HspAI GCGC 2 cut(s) 188, 319
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 362
MaeI CTAG 3 cut(s) 114, 329, 597
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 245, 324
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 7 cut(s) 67, 205, 399, 590, 656, 719, 790
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 3 cut(s) 346, 444, 524
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 742
MnlI CCTC 5 cut(s) 144, 628, 679, 762, 767
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 471
MscI TGGCCA 1 cut(s) 302
MseI TTAA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 2 cut(s) 6, 450
MvnI CGCG 2 cut(s) 319, 506
MwoI GCNNNNNNNGC 2 cut(s) 466, 695
NdeII GATC 1 cut(s) 507
NlaIII CATG 2 cut(s) 46, 99
NmuCI GTSAC 1 cut(s) 245
NruI TCGCGA 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 3 cut(s) 124, 230, 404
PinAI ACCGGT 1 cut(s) 5
PkrI GCNGC 1 cut(s) 318
Ple19I CGATCG 1 cut(s) 510
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 668
PstNI CAGNNNCTG 1 cut(s) 424
PvuI CGATCG 1 cut(s) 510
RruI TCGCGA 1 cut(s) 506
RsaI GTAC 3 cut(s) 172, 277, 587
RsaNI GTAC 3 cut(s) 171, 276, 586
SacI GAGCTC 1 cut(s) 367
SalI GTCGAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 668
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 1 cut(s) 742
SduI GDGCHC 1 cut(s) 367
SetI ASST 9 cut(s) 108, 326, 367, 440, 504, 545, 639, 745, 769
SinI GGWCC 1 cut(s) 668
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 3 cut(s) 346, 444, 524
SsiI CCGC 1 cut(s) 317
SspMI CTAG 3 cut(s) 114, 329, 597
SstI GAGCTC 1 cut(s) 367
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 4 cut(s) 36, 481, 585, 590
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 262, 367, 510
TasI AATT 3 cut(s) 346, 444, 524
TatI WGTACW 2 cut(s) 170, 585
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 3 cut(s) 124, 230, 404
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 3 cut(s) 162, 579, 595
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 68, 74, 78, 344, 537, 715
TspRI CASTG 3 cut(s) 162, 579, 595
VpaK11BI GGWCC 1 cut(s) 668
XapI RAATTY 2 cut(s) 346, 524
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 3 cut(s) 114, 329, 597
ZrmI AGTACT 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.