Prupe.5G150200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000150
Physical Location & Seq
Reverse (-)
13640456 .. 13643388
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G150200.1

Sequence Viewer

Length: 474 bp
ATGGCATTCGGCTTTAAGATGTACGAAGGTGATGACGGTAGTATTGTATATTTCCTAAGCCAACTGTTTGTATTGGAAGGTCTGGAGATTGCGCTTCCACCATTGCCATATAGCGAGGAGTATAAGACAGACTATTTGGTTGATTTGGGGAACAATGAGTTTTTCTATGTCAAGACTAGCCGTACACTTCTCTCGGTTCAATATATTTGTATCACCACGTTTCGAATTGTTGTTGAAGAAGCAGGAAGTCTTAAGATGAAGACCATACATTCTACTGTTCGTTCGGTGGATATACAGTGCGGTGAATGGTTCAATCTTGTTTCATGCTTCATTTTTGGGTGCAAGGATTATGAACCTAAAGAAGAAGAAACCAGTCTGGATGAGAGTTTTTCTATGGTGAACCATAGGAGAATGGCAAAGAAAGAAGCTGGGTGTGGAATAGCTGCCAGGGAGTATGTAATCTGTTGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

4.79

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AfaI GTAC 2 cut(s) 23, 184
AflII CTTAAG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 200, 236, 313
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 3 cut(s) 428, 443, 471
AluI AGCT 3 cut(s) 428, 443, 471
ApeKI GCWGC 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 4 cut(s) 41, 205, 314, 409
AsuII TTCGAA 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 430
BseYI CCCAGC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 223
BspACI CCGC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 4 cut(s) 38, 66, 277, 297
BstAFI CTTAAG 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 22, 183
CviAII CATG 1 cut(s) 324
CviJI RGCY 6 cut(s) 12, 60, 180, 428, 443, 471
CviKI_1 RGCY 6 cut(s) 12, 60, 180, 428, 443, 471
CviQI GTAC 2 cut(s) 22, 183
DdeI CTNAG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 446
FaeI CATG 1 cut(s) 327
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 444
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 104
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 327
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HphI GGTGA 4 cut(s) 41, 205, 314, 409
Hpy166II GTNNAC 2 cut(s) 185, 400
Hpy188III TCNNGA 3 cut(s) 83, 172, 377
Hpy8I GTNNAC 2 cut(s) 185, 400
HpyAV CCTTC 2 cut(s) 20, 71
HpyCH4III ACNGT 4 cut(s) 38, 66, 277, 297
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 327
HspAI GCGC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 68, 228, 362, 385, 414, 433, 460
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 218
MboII GAAGA 4 cut(s) 248, 271, 374, 377
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 109
MseI TTAA 2 cut(s) 15, 252
MspCI CTTAAG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 448
NlaIII CATG 1 cut(s) 327
NspV TTCGAA 1 cut(s) 223
PctI GAATGC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 446
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 446
RsaI GTAC 2 cut(s) 23, 184
RsaNI GTAC 2 cut(s) 22, 183
SaqAI TTAA 2 cut(s) 15, 252
SatI GCNGC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 448
SetI ASST 7 cut(s) 31, 82, 221, 358, 430, 445, 473
SfuI TTCGAA 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 4 cut(s) 38, 66, 277, 297
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 223
TasI AATT 1 cut(s) 225
Tru1I TTAA 2 cut(s) 15, 252
Tru9I TTAA 2 cut(s) 15, 252
TscAI CASTG 1 cut(s) 302
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 4 cut(s) 272, 312, 319, 366
TspRI CASTG 1 cut(s) 302
Vha464I CTTAAG 1 cut(s) 251
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.