Rh2DG649200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000150
Physical Location & Seq
Reverse (-)
87561209 .. 87562524
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG649200.1

Sequence Viewer

Length: 537 bp
ATGTTTGTTATGGTGAGATTCAATCGTGGTCCATACCATGGTGCAGTATATAAAGTAAAACTTGAGCATGGAGAATCTGGTGAAGCTTCCGCAGGGGCTGAAGTTGAATCCGCTCTGCCGGTACTTAACCCGGTGTCTACTTTTTTTGATAAGAGTTTTGAGCTCCCGAAGAATTGTTTGTTTGAGGGTGCGAGACTGGCCGGAACCAATGTTCTATTGAGCATCAATATCTTTATCACTACATTTCGAATCCTACGTGAGGAAGGTGGAATGGATGTCAGGACCCTACGTTCATCTGTATTTCAAGTCGGCATGATGGGCAGTGGCGCTTTCCATGTAAACTTCAGCTTCACACCGGACTGCGAGGATATTGAACCAGAAGAACAATACTGTCCAACTGCACCGGCCGGAAGTAAAAGTGAAAGTGCATTGACTTCAGAAGAAAAAGGAAATATAGATCAATGTAGGTGGGATGTTGCAACTGGAAAACAAGAGGACTTCTTCTCCATTCCAACCAAACCGCTTATTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.55

Weight (kDa)

4.91

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 137
AciI CCGC 3 cut(s) 90, 111, 521
AcoI YGGCCR 2 cut(s) 198, 405
AcuI CTGAAG 3 cut(s) 120, 328, 420
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 38, 259
AgsI TTSAA 4 cut(s) 22, 107, 305, 374
AloI GAACNNNNNNTCC 4 cut(s) 195, 227, 274, 306
AluBI AGCT 4 cut(s) 86, 163, 348, 534
AluI AGCT 4 cut(s) 86, 163, 348, 534
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 198, 405
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 29, 282
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 25, 92
AsuII TTCGAA 1 cut(s) 247
AvaII GGWCC 2 cut(s) 29, 282
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BccI CCATC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 29, 282
BmgT120I GGNCC 2 cut(s) 29, 282
BmiI GGNNCC 2 cut(s) 205, 284
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 259
Bse118I RCCGGY 2 cut(s) 118, 403
Bse1I ACTGG 2 cut(s) 201, 487
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 2 cut(s) 280, 478
BseLI CCNNNNNNNGG 2 cut(s) 38, 259
BseNI ACTGG 2 cut(s) 201, 487
BseX3I CGGCCG 1 cut(s) 405
BsgI GTGCAG 2 cut(s) 63, 384
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 2 cut(s) 200, 407
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 6 cut(s) 119, 131, 201, 356, 404, 408
BslI CCNNNNNNNGG 2 cut(s) 38, 259
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 2 cut(s) 200, 407
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 457
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 90, 111, 521
BspANI GGCC 2 cut(s) 200, 407
BspLI GGNNCC 2 cut(s) 205, 284
BspT104I TTCGAA 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 118, 403
BsrI ACTGG 2 cut(s) 201, 487
BssAI RCCGGY 2 cut(s) 118, 403
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 280, 478
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 457
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 2 cut(s) 197, 318
BstSCI CCNGG 1 cut(s) 129
BstZI CGGCCG 1 cut(s) 405
BsuRI GGCC 2 cut(s) 200, 407
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 280, 478
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 2 cut(s) 118, 403
Cfr13I GGNCC 2 cut(s) 29, 282
Csp6I GTAC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 4 cut(s) 38, 68, 313, 335
CviJI RGCY 7 cut(s) 86, 98, 163, 200, 348, 407, 534
CviKI_1 RGCY 7 cut(s) 86, 98, 163, 200, 348, 407, 534
CviQI GTAC 1 cut(s) 122
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
EaeI YGGCCR 2 cut(s) 198, 405
EagI CGGCCG 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 29, 282
Eco52I CGGCCG 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 120, 328, 420
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 41, 71, 316, 338
FaiI YATR 9 cut(s) 11, 34, 39, 49, 51, 69, 314, 336, 455
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 4 cut(s) 37, 67, 312, 334
FblI GTMKAC 1 cut(s) 137
FokI GGATG 2 cut(s) 287, 485
FriOI GRGCYC 1 cut(s) 165
FspBI CTAG 1 cut(s) 535
GlaI GCGC 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 2 cut(s) 200, 407
HapII CCGG 6 cut(s) 119, 131, 201, 356, 404, 408
HhaI GCGC 1 cut(s) 329
Hin1II CATG 4 cut(s) 41, 71, 316, 338
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 4 cut(s) 18, 74, 107, 249
HpaII CCGG 6 cut(s) 119, 131, 201, 356, 404, 408
HphI GGTGA 2 cut(s) 25, 92
Hpy166II GTNNAC 2 cut(s) 138, 340
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 2 cut(s) 166, 280
Hpy8I GTNNAC 2 cut(s) 138, 340
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 2 cut(s) 256, 289
HpyCH4V TGCA 4 cut(s) 44, 401, 428, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 318
HpySE526I ACGT 2 cut(s) 256, 289
Hsp92II CATG 4 cut(s) 41, 71, 316, 338
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 168
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 535
MaeII ACGT 2 cut(s) 256, 289
MalI GATC 1 cut(s) 459
MbiI CCGCTC 1 cut(s) 113
MboI GATC 1 cut(s) 457
MboII GAAGA 4 cut(s) 181, 392, 452, 493
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 419, 536
MnlI CCTC 4 cut(s) 178, 253, 358, 487
MseI TTAA 1 cut(s) 126
MspI CCGG 6 cut(s) 119, 131, 201, 356, 404, 408
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 197, 318
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 37
NdeII GATC 1 cut(s) 457
NlaIII CATG 4 cut(s) 41, 71, 316, 338
NlaIV GGNNCC 2 cut(s) 205, 284
NspV TTCGAA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 4 cut(s) 18, 74, 107, 249
PflMI CCANNNNNTGG 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 205, 284
PspPI GGNCC 2 cut(s) 29, 282
PspPPI RGGWCCY 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 2 cut(s) 29, 282
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 88, 165, 259, 268, 292, 350, 470, 536
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 247
SinI GGWCC 2 cut(s) 29, 282
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 172
SsiI CCGC 3 cut(s) 90, 111, 521
SspMI CTAG 1 cut(s) 535
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 2 cut(s) 259, 292
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 172
TfiI GAWTC 4 cut(s) 18, 74, 107, 249
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 29, 282
XagI CCTNNNNNAGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.