RLG00000005302

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000150
Physical Location & Seq
Reverse (-)
66650802 .. 66651959
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005302

Sequence Viewer

Length: 735 bp
ATGGGCTCAAAGTCTAATGGTAGTACTAGCTATTATCTAGAGAAACCATCGTTGTTGCGAGGCCTGAAGAGTGGGGTTAAGGGGGACAGTACTGTCTTTCAGCAAACGGAGTATTTGGTTCATTTGGGGAACTTGAAATTTTGTCTTGCCCAAACTATCATGGAGGACTTGACTACAGGGCGTCAACCTCTATGGATCACCACATTCCAGGTTATCAATGAAGAAGGAGGAGGAAGGTATATCAAGACATTACATTCAACTGTTCGTGATGTGAACATAAAGTGTTTTGGTAAGGGTTTTGGTCGATTCATTGTTGATTTTAGCTTCACAGTTGGGGAGGATTTTGAACCAAAAGAAAGAGGGAGTGTTGATATGATGGAGGAGCAGCCGAAAGAAGAAACTGCGCTGATTTCTGATGAAATCATGGAGGACAGAGGTGTTTCAGTAAATGAAAAAGAAACAAATTCCCAATGTGAATCAGAAAATGAAGAAGAAACAAAATGTGAAGGTGAGTCAGAAAATGAAGAAACAAAATGCGAAGGTGATTCAGAAAATGAAGAAAGAGAAGACAAGGAGAAGTCTGTTAATGGCGTTAACGCTTGTCCATTGGCTAAGGAAAAGGGGACAGCCAAAAAGAGAGACAAAAGATTGAGTATTTTTCACAGGAGCCTTAAAGCCAAGTCTGGTCACAAGAAGCGTAAATGGAAGAATGTTTCATCAAGGTCCGTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.51

Weight (kDa)

5.64

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 137, 463
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 25, 91
AgsI TTSAA 3 cut(s) 136, 258, 347
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 30, 324
AluI AGCT 2 cut(s) 30, 324
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 2 cut(s) 137, 463
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 723
AsuHPI GGTGA 3 cut(s) 190, 521, 554
AvaII GGWCC 1 cut(s) 723
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 55, 370
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 2 cut(s) 27, 38
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
BmcAI AGTACT 2 cut(s) 25, 91
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 723
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 1 cut(s) 668
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 243, 395
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 63
BslFI GGGAC 2 cut(s) 98, 637
BsmAI GTCTC 1 cut(s) 633
BsmFI GGGAC 2 cut(s) 98, 637
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 668
BspPI GGATC 1 cut(s) 203
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 89, 94, 262, 331
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 63
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 723
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 24, 90
CviAII CATG 2 cut(s) 160, 424
CviJI RGCY 9 cut(s) 6, 30, 63, 324, 388, 611, 629, 669, 677
CviKI_1 RGCY 9 cut(s) 6, 30, 63, 324, 388, 611, 629, 669, 677
CviQI GTAC 2 cut(s) 24, 90
DdeI CTNAG 1 cut(s) 612
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 163, 427
FaiI YATR 6 cut(s) 161, 193, 240, 278, 374, 425
FaqI GGGAC 2 cut(s) 98, 637
FatI CATG 2 cut(s) 159, 423
Fnu4HI GCNGC 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 27, 38
GlaI GCGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 2 cut(s) 163, 427
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 2 cut(s) 185, 595
HindII GTYRAC 2 cut(s) 185, 595
HinfI GANTC 4 cut(s) 306, 476, 512, 545
HpaI GTTAAC 1 cut(s) 595
HphI GGTGA 3 cut(s) 190, 521, 554
Hpy166II GTNNAC 3 cut(s) 185, 274, 595
Hpy188I TCNGA 4 cut(s) 415, 481, 517, 550
Hpy188III TCNNGA 3 cut(s) 38, 244, 266
Hpy8I GTNNAC 3 cut(s) 185, 274, 595
HpyAV CCTTC 4 cut(s) 218, 228, 500, 533
HpyCH4III ACNGT 4 cut(s) 89, 94, 262, 331
HpyF3I CTNAG 1 cut(s) 612
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 2 cut(s) 163, 427
HspAI GCGC 1 cut(s) 404
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 2 cut(s) 382, 666
LpnPI CCDG 6 cut(s) 77, 162, 194, 221, 649, 669
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 2 cut(s) 27, 38
MaeIII GTNAC 1 cut(s) 686
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 9 cut(s) 79, 233, 407, 500, 503, 536, 569, 578, 718
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 137, 463
MlyI GAGTC 1 cut(s) 521
MseI TTAA 4 cut(s) 78, 585, 594, 672
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 163, 427
NlaIV GGNNCC 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 686
PceI AGGCCT 1 cut(s) 63
PfeI GAWTC 3 cut(s) 306, 476, 545
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 668
PspPI GGNCC 1 cut(s) 723
RsaI GTAC 2 cut(s) 25, 91
RsaNI GTAC 2 cut(s) 24, 90
SaqAI TTAA 4 cut(s) 78, 585, 594, 672
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 723
ScaI AGTACT 2 cut(s) 25, 91
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 32, 190, 213, 239, 326, 439, 511, 544, 725
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 723
Sse9I AATT 2 cut(s) 137, 463
SseBI AGGCCT 1 cut(s) 63
SspMI CTAG 2 cut(s) 27, 38
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 89, 94, 262, 331
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 137, 463
TatI WGTACW 2 cut(s) 23, 89
TfiI GAWTC 3 cut(s) 306, 476, 545
Tru1I TTAA 4 cut(s) 78, 585, 594, 672
Tru9I TTAA 4 cut(s) 78, 585, 594, 672
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 9 cut(s) 110, 234, 298, 432, 465, 501, 537, 570, 705
TspGWI ACGGA 2 cut(s) 122, 715
VpaK11BI GGWCC 1 cut(s) 723
XapI RAATTY 2 cut(s) 137, 463
XbaI TCTAGA 1 cut(s) 37
XspI CTAG 2 cut(s) 27, 38
ZrmI AGTACT 2 cut(s) 25, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.