Prupe.I003600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_26
OG0000150
Physical Location & Seq
Reverse (-)
17340 .. 19778
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I003600.1

Sequence Viewer

Length: 1572 bp
ATGGCCGCTGAGCTCACCTCGGGTCAAGATCATGCCTTGACGATGGCTTCATGCCAAGACGAGCTCCTTGCCAAGACATCGAAGATCAAGAAATCTCTGCGCAAGATATGGGCGATGGAGAAGTCTCTGCGCGAACGGGGGGAGAACGAGAAATATCTAGCCGCGCTTTTGGCCCAGAAAATCCAACTGATCGATTTGAAGAAATTAATTTCGAAGGAGCTTCGCTTACTACGCCGCAGTAAGGCCGACAGTCACAAACATGGCTTGCCCATGGTTGAGAATGCATCAACGACGGTAAATCAGGGGGAAGATAGATCTTTGTTTTTAATGGTAAATTTCACTAGGGGCAAATACACTGATGCCATCTATGAAGTTAAATTCAAATTTGGAGGAGAAGTTGATGATATGGGTGCACGAATAGCACGTGTAGCCAAGTTCAGTGGTTCTACCCATTTGGGTGCAAGGCTTTTCGACCGCTCCCAACTATATGTGTTTTCAGAGGAGGGTTGGGATAAACCTTGCGTTGATTCATTTGGAGGGTATATCTTTGATACGAAAACTAGGGCATTAGATCGCTTAACACCTTCTACCGTACAGTTTAAGCAGCATGGAACAGTTGTGTCGGCATATGGCACACTTTATTTTCTTGAAACCCAAACGGAATTTGTACAAGGTTCAGGCTTATTCTTTGGGAAATATAACCCTGATAAGAAGGATTGGGTGCAAATGCCTTCGTTTCCATTTTCTTATAAGTTTACTACGGAGGTAACTGGTTTTGCTGTTGGTTATGGCGTTATTTTGTATACATTGTCTGACTTGCATGGAAACTTTGATGTCGTTGCTTTTCACTTGGGTAGAAAGAATTGGAAACGAGTTGAAATTGGCACTTGTACTCCGTTCCAAGGGAGAGCTGTGGTTGTAGGTGAGACTATATATGCCTTAAATTATTTTAGGACGGACGAGATTATAGCATACTCCTTGAGGAGGAAGGTAGTTGACGACGGTGATATTGCATATTCACTAGTCCAACAATTTGAATTGAACGGCCTTGACATTGCTGATCCGCCTTTGCAATTTGATGGTCTTGTGACTGACTATTTGGTTCATCTTGGGAACCAAGACTTCGTTCATGTTAAGACTGGTACTAACGAAGAATGTGATGAGGTTCAACATCTTTGTATCACCACGTTTCAAATTGTTCAAGGAATGATAGAGACCTTGCATTCAACTGTTCTTCGTGTGAAAATCGATGTTCGTAATTGGTTCAGGCTTACGCTCAGCTTTACTCCAGAATGCGGGGATTATGAACCCGAAGAAAGTAAGAGTGCAGCAAGCATGAAGCAGCCAAAACAAGAAGATGACACCACTTTGGATGAGAATTCTTTGATGCATGAGGAAGAAGCCAAACATGAAGTAGCCTTCATGCATCATGAAAAAGCAAACCAGACAAAACCCAAGAATGCAAGCGGAATAATTAAAAACAAAAGAAAAAGAAAAAGCGGATGGAAGGAGGGATTACATGTAACCAAAAAAAAAAAAGTGGGATTACAGGTAGTAGAAAACAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

524

Amino Acids

59.37

Weight (kDa)

7.66

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
Acc16I TGCGCA 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 803
AccII CGCG 2 cut(s) 132, 164
AciI CCGC 8 cut(s) 6, 162, 235, 475, 1064, 1296, 1467, 1500
AclWI GGATC 1 cut(s) 1055
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 334, 377, 383, 662, 1378
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 4 cut(s) 594, 669, 892, 1144
AfiI CCNNNNNNNGG 4 cut(s) 241, 902, 984, 1295
AflIII ACRYGT 2 cut(s) 424, 1519
AhlI ACTAGT 1 cut(s) 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 1110, 1142
AluBI AGCT 5 cut(s) 13, 64, 220, 911, 1281
AluI AGCT 5 cut(s) 13, 64, 220, 911, 1281
Alw21I GWGCWC 3 cut(s) 15, 66, 415
Alw26I GTCTC 3 cut(s) 129, 920, 1208
Alw44I GTGCAC 1 cut(s) 411
AlwI GGATC 1 cut(s) 1055
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 4 cut(s) 3, 171, 243, 1045
ApaLI GTGCAC 1 cut(s) 411
ApeKI GCWGC 3 cut(s) 604, 1328, 1342
ApoI RAATTY 5 cut(s) 334, 377, 383, 662, 1378
ArsI GACNNNNNNTTYG 2 cut(s) 1081, 1113
AseI ATTAAT 1 cut(s) 206
AspLEI GCGC 3 cut(s) 102, 132, 166
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 4 cut(s) 7, 935, 1016, 1174
AsuII TTCGAA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 15, 66
BbrPI CACGTG 1 cut(s) 425
Bbv12I GWGCWC 3 cut(s) 15, 66, 415
BbvI GCAGC 3 cut(s) 616, 1340, 1354
BccI CCATC 5 cut(s) 37, 109, 371, 1073, 1497
BceAI ACGGC 1 cut(s) 1060
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcoDI GTCTC 3 cut(s) 129, 920, 1208
BcuI ACTAGT 1 cut(s) 1021
BfaI CTAG 4 cut(s) 158, 342, 561, 1022
BglII AGATCT 1 cut(s) 314
BisI GCNGC 6 cut(s) 6, 162, 235, 605, 1329, 1343
BlpI GCTNAGC 2 cut(s) 9, 1277
BlsI GCNGC 6 cut(s) 7, 163, 236, 606, 1330, 1344
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 1115
BmsI GCATC 4 cut(s) 293, 349, 1377, 1435
BplI GAGNNNNNCTC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 1272
Bpu1102I GCTNAGC 2 cut(s) 9, 1277
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 1000
Bsa29I ATCGAT 2 cut(s) 192, 1248
BsaAI YACGTR 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 3 cut(s) 18, 270, 901
BsaXI ACNNNNNCTCC 4 cut(s) 381, 411, 877, 907
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 902, 984, 1295
Bse1I ACTGG 2 cut(s) 775, 1144
Bse3DI GCAATG 1 cut(s) 1053
BseCI ATCGAT 2 cut(s) 192, 1248
BseDI CCNNGG 3 cut(s) 18, 270, 901
BseGI GGATG 2 cut(s) 1378, 1508
BseLI CCNNNNNNNGG 4 cut(s) 241, 902, 984, 1295
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 1 cut(s) 1291
BseNI ACTGG 2 cut(s) 775, 1144
BseRI GAGGAG 3 cut(s) 405, 515, 997
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 3 cut(s) 616, 1340, 1354
BsgI GTGCAG 1 cut(s) 1347
Bsh1236I CGCG 2 cut(s) 132, 164
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 4 cut(s) 5, 173, 245, 1047
BshVI ATCGAT 2 cut(s) 192, 1248
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 3 cut(s) 15, 66, 415
BsiHKCI CYCGRG 1 cut(s) 19
BslI CCNNNNNNNGG 4 cut(s) 241, 902, 984, 1295
BsmAI GTCTC 3 cut(s) 129, 920, 1208
BsmI GAATGC 4 cut(s) 286, 1222, 1298, 1465
BsnI GGCC 4 cut(s) 5, 173, 245, 1047
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 15, 66, 415
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
Bsp1720I GCTNAGC 2 cut(s) 9, 1277
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 8 cut(s) 6, 162, 235, 475, 1064, 1296, 1467, 1500
BspANI GGCC 4 cut(s) 5, 173, 245, 1047
BspCNI CTCAG 1 cut(s) 1290
BspDI ATCGAT 2 cut(s) 192, 1248
BspFNI CGCG 2 cut(s) 132, 164
BspHI TCATGA 1 cut(s) 1429
BspLI GGNNCC 1 cut(s) 1115
BspPI GGATC 1 cut(s) 1055
BspT104I TTCGAA 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 1208
BsrBI CCGCTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 1053
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 2 cut(s) 775, 1144
BssECI CCNNGG 3 cut(s) 18, 270, 901
BssMI GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
BssNAI GTATAC 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 270, 901
Bst1107I GTATAC 1 cut(s) 804
Bst4CI ACNGT 7 cut(s) 251, 295, 592, 597, 616, 1004, 1231
BstAUI TGTACA 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 266, 1333, 1465
BstDEI CTNAG 2 cut(s) 9, 1277
BstDSI CCRYGG 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 982
BstF5I GGATG 2 cut(s) 1378, 1508
BstFNI CGCG 2 cut(s) 132, 164
BstHHI GCGC 3 cut(s) 102, 132, 166
BstKTI GATC 6 cut(s) 31, 87, 192, 317, 574, 1063
BstMAI GTCTC 3 cut(s) 129, 920, 1208
BstMBI GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 4 cut(s) 170, 231, 419, 428
BstNSI RCATGY 1 cut(s) 1523
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 2 cut(s) 132, 164
BstV1I GCAGC 3 cut(s) 616, 1340, 1354
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BstZ17I GTATAC 1 cut(s) 804
Bsu15I ATCGAT 2 cut(s) 192, 1248
BsuRI GGCC 4 cut(s) 5, 173, 245, 1047
BsuTUI ATCGAT 2 cut(s) 192, 1248
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 1378, 1508
BtsIMutI CAGTG 2 cut(s) 354, 445
Cac8I GCNNGC 3 cut(s) 266, 1333, 1465
CciI TCATGA 1 cut(s) 1429
CfoI GCGC 3 cut(s) 102, 132, 166
Cfr13I GGNCC 1 cut(s) 172
ClaI ATCGAT 2 cut(s) 192, 1248
Csp6I GTAC 4 cut(s) 593, 668, 891, 1143
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviQI GTAC 4 cut(s) 593, 668, 891, 1143
DdeI CTNAG 2 cut(s) 9, 1277
DpnI GATC 6 cut(s) 30, 86, 191, 316, 573, 1062
DpnII GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 1053
Ecl136II GAGCTC 2 cut(s) 13, 64
Eco130I CCWWGG 2 cut(s) 270, 901
Eco24I GRGCYC 2 cut(s) 15, 66
Eco31I GGTCTC 1 cut(s) 1208
Eco53kI GAGCTC 2 cut(s) 13, 64
Eco72I CACGTG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 19
EcoICRI GAGCTC 2 cut(s) 13, 64
EcoNI CCTNNNNNAGG 1 cut(s) 982
EcoRI GAATTC 1 cut(s) 1378
EcoT14I CCWWGG 2 cut(s) 270, 901
EcoT22I ATGCAT 3 cut(s) 286, 1392, 1428
EcoT38I GRGCYC 2 cut(s) 15, 66
ErhI CCWWGG 2 cut(s) 270, 901
FauI CCCGC 1 cut(s) 1289
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 6 cut(s) 6, 162, 235, 605, 1329, 1343
FokI GGATG 2 cut(s) 1385, 1515
FriOI GRGCYC 2 cut(s) 15, 66
Fsp4HI GCNGC 6 cut(s) 6, 162, 235, 605, 1329, 1343
FspBI CTAG 4 cut(s) 158, 342, 561, 1022
FspI TGCGCA 1 cut(s) 101
GlaI GCGC 3 cut(s) 101, 131, 165
GluI GCNGC 6 cut(s) 6, 162, 235, 605, 1329, 1343
GsuI CTGGAG 1 cut(s) 1272
HaeIII GGCC 4 cut(s) 5, 173, 245, 1047
HhaI GCGC 3 cut(s) 102, 132, 166
Hin6I GCGC 3 cut(s) 100, 130, 164
HinP1I GCGC 3 cut(s) 100, 130, 164
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HinfI GANTC 1 cut(s) 527
HphI GGTGA 4 cut(s) 7, 935, 1016, 1174
Hpy166II GTNNAC 4 cut(s) 413, 756, 804, 997
Hpy188I TCNGA 2 cut(s) 499, 814
Hpy188III TCNNGA 5 cut(s) 26, 88, 647, 1289, 1430
Hpy8I GTNNAC 4 cut(s) 413, 756, 804, 997
Hpy99I CGWCG 2 cut(s) 295, 1004
HpyAV CCTTC 7 cut(s) 208, 594, 706, 741, 982, 1429, 1501
HpyCH4III ACNGT 7 cut(s) 251, 295, 592, 597, 616, 1004, 1231
HpyCH4IV ACGT 2 cut(s) 424, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 231, 419, 428
HpyF3I CTNAG 2 cut(s) 9, 1277
HpySE526I ACGT 2 cut(s) 424, 1187
HspAI GCGC 3 cut(s) 100, 130, 164
Kzo9I GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
LmnI GCTCC 3 cut(s) 69, 217, 482
Lsp1109I GCAGC 3 cut(s) 616, 1340, 1354
LweI GCATC 4 cut(s) 293, 349, 1377, 1435
MaeI CTAG 4 cut(s) 158, 342, 561, 1022
MaeII ACGT 2 cut(s) 424, 1187
MaeIII GTNAC 4 cut(s) 251, 766, 1087, 1522
MalI GATC 6 cut(s) 30, 86, 191, 316, 573, 1062
MbiI CCGCTC 1 cut(s) 477
MboI GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
MboII GAAGA 8 cut(s) 94, 211, 320, 1163, 1226, 1325, 1367, 1409
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 3 cut(s) 15, 66, 415
MmeI TCCRAC 2 cut(s) 208, 1051
Mph1103I ATGCAT 3 cut(s) 286, 1392, 1428
MseI TTAA 8 cut(s) 206, 326, 375, 578, 600, 941, 1134, 1476
MslI CAYNNNNRTG 2 cut(s) 258, 456
MspA1I CMGCKG 1 cut(s) 8
Mva1269I GAATGC 4 cut(s) 286, 1222, 1298, 1465
MvnI CGCG 2 cut(s) 132, 164
MwoI GCNNNNNNNGC 4 cut(s) 170, 231, 419, 428
NcoI CCATGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 628
NdeII GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
NlaIV GGNNCC 1 cut(s) 1115
NmuCI GTSAC 2 cut(s) 251, 1087
NsbI TGCGCA 1 cut(s) 101
NsiI ATGCAT 3 cut(s) 286, 1392, 1428
NspI RCATGY 1 cut(s) 1523
NspV TTCGAA 1 cut(s) 212
PagI TCATGA 1 cut(s) 1429
PciI ACATGT 1 cut(s) 1519
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PctI GAATGC 4 cut(s) 286, 1222, 1298, 1465
PfeI GAWTC 1 cut(s) 527
PkrI GCNGC 6 cut(s) 7, 163, 236, 606, 1330, 1344
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 425
PscI ACATGT 1 cut(s) 1519
PshBI ATTAAT 1 cut(s) 206
PsiI TTATAA 1 cut(s) 750
Psp124BI GAGCTC 2 cut(s) 15, 66
PspCI CACGTG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 1115
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 4 cut(s) 594, 669, 892, 1144
RsaNI GTAC 4 cut(s) 593, 668, 891, 1143
RseI CAYNNNNRTG 2 cut(s) 258, 456
SacI GAGCTC 2 cut(s) 15, 66
SaqAI TTAA 8 cut(s) 206, 326, 375, 578, 600, 941, 1134, 1476
SatI GCNGC 6 cut(s) 6, 162, 235, 605, 1329, 1343
Sau3AI GATC 6 cut(s) 28, 84, 189, 314, 571, 1060
Sau96I GGNCC 1 cut(s) 172
SduI GDGCHC 3 cut(s) 15, 66, 415
SfaNI GCATC 4 cut(s) 293, 349, 1377, 1435
SfuI TTCGAA 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 258, 456
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
SpeI ACTAGT 1 cut(s) 1021
SsiI CCGC 8 cut(s) 6, 162, 235, 475, 1064, 1296, 1467, 1500
SspMI CTAG 4 cut(s) 158, 342, 561, 1022
SstI GAGCTC 2 cut(s) 15, 66
StyI CCWWGG 2 cut(s) 270, 901
TaaI ACNGT 7 cut(s) 251, 295, 592, 597, 616, 1004, 1231
TaiI ACGT 2 cut(s) 427, 1190
TaqI TCGA 5 cut(s) 80, 192, 212, 471, 1248
TatI WGTACW 2 cut(s) 667, 890
TauI GCSGC 3 cut(s) 8, 164, 237
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 8 cut(s) 206, 326, 375, 578, 600, 941, 1134, 1476
Tru9I TTAA 8 cut(s) 206, 326, 375, 578, 600, 941, 1134, 1476
TscAI CASTG 2 cut(s) 361, 445
TseFI GTSAC 2 cut(s) 251, 1087
TseI GCWGC 3 cut(s) 604, 1328, 1342
Tsp45I GTSAC 2 cut(s) 251, 1087
TspGWI ACGGA 4 cut(s) 674, 776, 885, 971
TspRI CASTG 2 cut(s) 361, 445
VneI GTGCAC 1 cut(s) 411
VspI ATTAAT 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 982
XapI RAATTY 5 cut(s) 334, 377, 383, 662, 1378
XceI RCATGY 1 cut(s) 1523
XmiI GTMKAC 1 cut(s) 803
XspI CTAG 4 cut(s) 158, 342, 561, 1022
Zsp2I ATGCAT 3 cut(s) 286, 1392, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.