Rh1DG423000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
63704787 .. 63705455
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG423000.1

Sequence Viewer

Length: 669 bp
ATGCCATTTGTTATGGGTATACTGTTGTCCATGAAAACTAAGAAAAAATATGAAGCGGTGGCTTTTCATATTCATAGCAGAACATGGCACAAGGTCAAAATTAGTCCAGACAATCCTTATTATTATCCTTTCTACGGGCGGGCTGTGGTTGTAGGTGACACTAACTATGCCTTGGCACATAGTCTGAATTTGATTCTAGTATTCTCTTTTTGGTGGGATTCAGATGAGGATGGTGATATTGCCAAGCGCCGACATTTTTTGGGCACTCCATTGTCTTTGATATTAAAGGACAAGTATCATCCTCGGTGCCTGTTAATAGGGTTTAGGACTCAAAGGTTGGTTCATTTAGGGAGACGGTACTTCTGTGTTGTACAGACCGGTCTAAACAATGATTCTCTTGAGTATCAGTACATTTGTGTGACGACTTTTAGAATTGTCGGTCAAGGGCAAGATATGAACATCGAGACTGTTCGGTCATCCATTTTTCGCATAGCGATTGAAGGAAATCTCGAATTTGAAATCAAGTTCAGCTTCAAGCCTGATTATAAAGACATTGAACCGGAAGAAGAAGAGTATAGCGCAACTAATGCACTGCCTGAAAGTAAAAGTGTTGCATGGACTTCGAAGGTGGAGAAGACTTCTTTTCCTTTCCAACTGGTCCTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.85

Weight (kDa)

8.32

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AasI GACNNNNNNGTC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 19
AciI CCGC 2 cut(s) 56, 139
AcsI RAATTY 2 cut(s) 187, 512
AfaI GTAC 3 cut(s) 359, 372, 410
AfiI CCNNNNNNNGG 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 4 cut(s) 500, 518, 535, 557
AluBI AGCT 1 cut(s) 531
AluI AGCT 1 cut(s) 531
Alw26I GTCTC 2 cut(s) 346, 458
ApoI RAATTY 2 cut(s) 187, 512
AsiGI ACCGGT 1 cut(s) 377
AspLEI GCGC 2 cut(s) 249, 581
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 167, 245
AsuII TTCGAA 1 cut(s) 623
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BanI GGYRCC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 641
BccI CCATC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BcoDI GTCTC 2 cut(s) 346, 458
BfaI CTAG 2 cut(s) 197, 667
BfoI RGCGCY 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 641
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 171, 302
BsaWI WCCGGW 2 cut(s) 377, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 171, 302
BseGI GGATG 3 cut(s) 235, 298, 476
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 660
BseSI GKGCMC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 306
BshTI ACCGGT 1 cut(s) 377
BsiSI CCGG 2 cut(s) 378, 560
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 346, 458
BsmBI CGTCTC 1 cut(s) 346
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 370
BspACI CCGC 2 cut(s) 56, 139
BspLI GGNNCC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 660
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 171, 302
BssNAI GTATAC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 24, 357, 469
Bst6I CTCTTC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 370
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 3 cut(s) 235, 298, 476
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 249, 581
BstMAI GTCTC 2 cut(s) 346, 458
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 641
BstZ17I GTATAC 1 cut(s) 20
BtsCI GGATG 3 cut(s) 235, 298, 476
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 249, 581
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 3 cut(s) 358, 371, 409
CspAI ACCGGT 1 cut(s) 377
CviAII CATG 3 cut(s) 31, 84, 615
CviJI RGCY 4 cut(s) 62, 143, 531, 538
CviKI_1 RGCY 4 cut(s) 62, 143, 531, 538
CviQI GTAC 3 cut(s) 358, 371, 409
DdeI CTNAG 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 34, 87, 618
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 3 cut(s) 30, 83, 614
FauI CCCGC 1 cut(s) 132
FblI GTMKAC 1 cut(s) 19
FokI GGATG 3 cut(s) 242, 285, 463
FspBI CTAG 2 cut(s) 197, 667
GlaI GCGC 2 cut(s) 248, 580
HaeII RGCGCY 1 cut(s) 250
HapII CCGG 2 cut(s) 378, 560
HhaI GCGC 2 cut(s) 249, 581
Hin1II CATG 3 cut(s) 34, 87, 618
Hin6I GCGC 2 cut(s) 247, 579
HinP1I GCGC 2 cut(s) 247, 579
HinfI GANTC 4 cut(s) 193, 218, 328, 392
HpaII CCGG 2 cut(s) 378, 560
HphI GGTGA 2 cut(s) 167, 245
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 186, 223
Hpy188III TCNNGA 4 cut(s) 107, 398, 463, 509
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 494, 619
HpyCH4III ACNGT 3 cut(s) 24, 357, 469
HpyCH4V TGCA 2 cut(s) 590, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 3 cut(s) 34, 87, 618
HspAI GCGC 2 cut(s) 247, 579
LpnPI CCDG 7 cut(s) 120, 323, 391, 552, 573, 609, 641
MaeI CTAG 2 cut(s) 197, 667
MaeIII GTNAC 2 cut(s) 155, 418
MboII GAAGA 4 cut(s) 575, 578, 581, 646
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 4 cut(s) 99, 187, 432, 512
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 2 cut(s) 220, 312
MseI TTAA 2 cut(s) 284, 314
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 378, 560
MwoI GCNNNNNNNGC 1 cut(s) 587
NlaIII CATG 3 cut(s) 34, 87, 618
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 155, 418
NspV TTCGAA 1 cut(s) 623
PfeI GAWTC 3 cut(s) 193, 218, 392
PinAI ACCGGT 1 cut(s) 377
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 658
RsaI GTAC 3 cut(s) 359, 372, 410
RsaNI GTAC 3 cut(s) 358, 371, 409
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 284, 314
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 266
SetI ASST 5 cut(s) 96, 157, 338, 533, 630
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 99, 187, 432, 512
SsiI CCGC 2 cut(s) 56, 139
SspMI CTAG 2 cut(s) 197, 667
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 24, 357, 469
TaqI TCGA 3 cut(s) 462, 510, 623
TaqII GACCGA 2 cut(s) 428, 462
TasI AATT 4 cut(s) 99, 187, 432, 512
TatI WGTACW 2 cut(s) 370, 408
TfiI GAWTC 3 cut(s) 193, 218, 392
Tru1I TTAA 2 cut(s) 284, 314
Tru9I TTAA 2 cut(s) 284, 314
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 2 cut(s) 155, 418
Tsp45I GTSAC 2 cut(s) 155, 418
TspDTI ATGAA 6 cut(s) 47, 56, 62, 66, 332, 470
TspRI CASTG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 2 cut(s) 187, 512
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 2 cut(s) 197, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.