MD06G1179400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000150
Physical Location & Seq
Reverse (-)
31919557 .. 31920798
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1179400.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGGAGGAGGGGGAAGCCAGATCGGTATTTATACTCGTGGAATTTGCATGTGGTCCATGTGAAGCTGGATTATATGAAATAAAAATCCAACAGGGAGGAGAAGTGATGCGACCTAAGATACTTGAACCTGAGTTTAAGTTTGTACTCCCCAAGTTTTGTTGGTTTGAGGGTGCGAGATTGCACAACTCCTCTAAATTACACCTAGTGTTAAATAAAGGACTCTTACCTCGTCATAACCTCCCCGCTGATGACAAGCTCGGCTCATATAGGGGACAAATTTATGACACAGAGACTAGGTCATTGGAAACATTCGAGCCTCCTTTAGCACCTAAGCCAGTTTCATATCTTATGTCTGCATACGGAAAGCTTTATAATCTTGCATCTCCACAGTGCTTCCGAGTGATGCCGAAGGTATTGTTTGAGCGGTATGATTCCAAAACTGATTCTTGGGAATCTCTTACTCATTTTGCATATTCTCGGGAACGGTCCAAGATGGAGATATCAGGTTATGCTGTTTGTCATGGATGTATTTTGGTTTCAACATACAATTTTCGATTTGAGTTCATGGTTTTTCATATAGACAGTAATACCTGGCATCAAGTTGATATATCTAGAAAGGAAGCTTATTATTCTGCTTTTCGAGGGAGGGCCGTGGTTGTAGGCAATTCTATATATGCCTTATCTATACAATGGGGAAAGGTTATAGCGTTCTCGCTTAAGATGAAAATAGGGAATGATGGCCGTATTACCTATTCGCTAGAGGAACCATTCTTTTTGCCAGGACTGGAGAGTAGGGTTGCGGACAGTACGGAATCTGGTCGTATCTCTAGGCCAACAGAGTATTTGGTCCATTTGGGGAAGTTGGAGTTCTGCCTTCTTCAATCTATCTCCACTGATTTGGATGAGCCTCAAGAGATGTTTATCACCACATTCGAAATTGTGTGTGATGATGAAACAATGCATATCAAGACTTTGGATTCTAGCGTCTGTGATTTCCACATAGGACATTCTGGTACACTTCGTATTTGTTTCAGCTTTATGCCAAAATGTGAGGATTTTGAGCCTGAAGAAGAGGAGAGTTTTCGGTTGGCTCATAAAAAGGTGACTACATATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.72

Weight (kDa)

5.7

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02900 FvH4_5g02920 FvH4_5g15972 FvH4_5g25390 FvH4_7g13450 FvH4_7g13450 FvH4_7g27631 FvH4_7g27640 FvH4_7g27660 FvH4_7g27670 FvH4_7g27710 FvH4_7g27720
malus_domestica MD06G1078700.v1.1 MD06G1178900.v1.1 MD06G1179300.v1.1 MD06G1179400.v1.1 MD14G1191500.v1.1 MD14G1191600.v1.1 MD16G1080700.v1.1 MD17G1269500.v1.1
prunus_persica Prupe.1G178900_v2.0.a1 Prupe.2G232100_v2.0.a1 Prupe.3G199300_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199700_v2.0.a1 Prupe.3G199800_v2.0.a1 Prupe.5G121900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G149900_v2.0.a1 Prupe.5G150200_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G179400_v2.0.a1 Prupe.5G190200_v2.0.a1 Prupe.5G190300_v2.0.a1 Prupe.5G190500_v2.0.a1 Prupe.5G190600_v2.0.a1 Prupe.5G190700_v2.0.a1 Prupe.5G190800_v2.0.a1 Prupe.5G196400_v2.0.a1 Prupe.5G196500_v2.0.a1 Prupe.5G196600_v2.0.a1 Prupe.5G196700_v2.0.a1 Prupe.5G196800_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.5G216900_v2.0.a1 Prupe.7G215400_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.7G215500_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.8G014700_v2.0.a1 Prupe.I003600_v2.0.a1
pyrus_communis pycom06g15900 pycom06g15930
rosa_chinensis RchiOBHm_Chr1g0378721 RchiOBHm_Chr1g0379031 RchiOBHm_Chr1g0379041 RchiOBHm_Chr1g0379111 RchiOBHm_Chr1g0379231 RchiOBHm_Chr1g0379381 RchiOBHm_Chr7g0205711 RchiOBHm_Chr7g0219841
rosa_laevigata RLG00000002638 RLG00000002641 RLG00000003360 RLG00000003362 RLG00000003364 RLG00000003972 RLG00000003975 RLG00000003976 RLG00000005302 RLG00000005303 RLG00000026142 RLG00000026318 RLG00000026378 RLG00000026379 RLG00000026396 RLG00000026404 RLG00000026405 RLG00000026412 RLG00000026413 RLG00000026766 RLG00000026768 RLG00000026774 RLG00000026775 RLG00000026776 RLG00000026778 RLG00000026779 RLG00000033034
rosa_multiflora Rmu_co8058818.1_g000001 Rmu_co8428857.1_g000001 Rmu_sc0000556.1_g000004 Rmu_sc0000556.1_g000017 Rmu_sc0000556.1_g000023 Rmu_sc0000556.1_g000038 Rmu_sc0000556.1_g000044 Rmu_sc0000556.1_g000046 Rmu_sc0000634.1_g000002 Rmu_sc0001232.1_g000027 Rmu_sc0003964.1_g000004 Rmu_sc0003964.1_g000013 Rmu_sc0006124.1_g000015 Rmu_sc0006761.1_g000020 Rmu_sc0006761.1_g000023 Rmu_sc0015070.1_g000001 Rmu_sc0017925.1_g000001 Rmu_sc0031430.1_g000005 Rmu_ssc0000119.1_g000014
rosa_roxburghii Rroxscaffold_2G00080740 Rroxscaffold_2G00090730 Rroxscaffold_3G00227790 Rroxscaffold_3G00235420 Rroxscaffold_3G00243990 Rroxscaffold_3G00244010 Rroxscaffold_3G00252040 Rroxscaffold_3G00252060 Rroxscaffold_3G00258760 Rroxscaffold_3G00258780 Rroxscaffold_3G00258790 Rroxscaffold_4G00280120 Rroxscaffold_4G00280210 Rroxscaffold_4G00280240 Rroxscaffold_4G00280300 Rroxscaffold_4G00280310 Rroxscaffold_5G00348380 Rroxscaffold_5G00352440 Rroxscaffold_5G00381760 Rroxscaffold_5G00381770 Rroxscaffold_7G00205800 Rroxscaffold_7G00205810 Rroxscaffold_7G00205850
rosa_rugosa Rorug01G0410800.1 Rorug01G0411700 Rorug01G0412500 Rorug06G0429700 Rorug07G0155400 Rorug07G0155600
rosa_samantha Rh1AG394500 Rh1AG433000 Rh1AG433600 Rh1AG434900 Rh1AG435200 Rh1BG359100 Rh1BG391200 Rh1BG392000 Rh1BG392700 Rh1BG399000 Rh1BG420100 Rh1BG420200 Rh1CG372200 Rh1CG403900 Rh1CG404800 Rh1CG412400 Rh1DG389700 Rh1DG389800 Rh1DG422400 Rh1DG423000 Rh1DG423500 Rh1DG452800 Rh1DG452900 Rh2AG541500 Rh2AG627500 Rh2BG637600 Rh2BG637700 Rh2CG524200 Rh2DG563600 Rh2DG563700 Rh2DG649200 Rh5CG213000 Rh6DG081900 Rh7AG030200 Rh7AG223700 Rh7AG224100 Rh7BG029600 Rh7BG030900 Rh7BG218800 Rh7BG283400 Rh7BG283700 Rh7BG283900 Rh7BG284100 Rh7BG284500 Rh7CG031200 Rh7CG031300 Rh7CG237000 Rh7CG237600 Rh7CG312000 Rh7DG030500 Rh7DG230800
rosa_wichuraiana Rw1G037920 Rw1G037950 Rw1G040890 Rw7G019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 424
AciI CCGC 3 cut(s) 243, 424, 800
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 2 cut(s) 41, 276
AcuI CTGAAG 1 cut(s) 1086
AdeI CACNNNGTG 1 cut(s) 205
AfaI GTAC 3 cut(s) 144, 808, 1015
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 3 cut(s) 125, 540, 881
AjnI CCWGG 2 cut(s) 590, 778
AluBI AGCT 5 cut(s) 65, 256, 367, 623, 1035
AluI AGCT 5 cut(s) 65, 256, 367, 623, 1035
Alw26I GTCTC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 3 cut(s) 648, 739, 830
ApoI RAATTY 2 cut(s) 41, 276
AspS9I GGNCC 4 cut(s) 53, 486, 648, 847
AsuHPI GGTGA 2 cut(s) 916, 1114
AsuII TTCGAA 1 cut(s) 933
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 3 cut(s) 53, 486, 847
BauI CACGAG 1 cut(s) 35
BccI CCATC 2 cut(s) 487, 731
BceAI ACGGC 2 cut(s) 635, 726
BciT130I CCWGG 2 cut(s) 592, 780
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 6 cut(s) 203, 294, 612, 758, 828, 981
BfrI CTTAAG 1 cut(s) 716
Bme1390I CCNGG 2 cut(s) 592, 780
Bme18I GGWCC 3 cut(s) 53, 486, 847
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 4 cut(s) 53, 486, 648, 847
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 2 cut(s) 592, 780
BmsI GCATC 4 cut(s) 96, 389, 393, 604
BpmI CTGGAG 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 894
BsaBI GATNNNNATC 1 cut(s) 920
BsaJI CCNNGG 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 2 cut(s) 335, 789
Bse8I GATNNNNATC 1 cut(s) 920
BseBI CCWGG 2 cut(s) 592, 780
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 2 cut(s) 530, 907
BseJI GATNNNNATC 1 cut(s) 920
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 335, 789
BseRI GAGGAG 4 cut(s) 20, 111, 178, 1088
BshFI GGCC 3 cut(s) 650, 741, 832
BsiHKCI CYCGRG 1 cut(s) 477
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 3 cut(s) 650, 741, 832
BsoBI CYCGRG 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 933
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 3 cut(s) 243, 424, 800
BspANI GGCC 3 cut(s) 650, 741, 832
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 765
BspT104I TTCGAA 1 cut(s) 933
BspTI CTTAAG 1 cut(s) 716
BsrBI CCGCTC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 335, 789
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 592, 780
Bst4CI ACNGT 4 cut(s) 390, 486, 584, 806
Bst6I CTCTTC 1 cut(s) 1065
BstAFI CTTAAG 1 cut(s) 716
BstBI TTCGAA 1 cut(s) 933
BstDEI CTNAG 3 cut(s) 114, 129, 330
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 530, 907
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 20
BstNI CCWGG 2 cut(s) 592, 780
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 590, 778
BstXI CCANNNNNNTGG 1 cut(s) 898
BsuRI GGCC 3 cut(s) 650, 741, 832
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 530, 907
BtsIMutI CAGTG 2 cut(s) 395, 891
Cfr13I GGNCC 4 cut(s) 53, 486, 648, 847
CseI GACGC 1 cut(s) 973
Csp6I GTAC 3 cut(s) 143, 807, 1014
CviAII CATG 5 cut(s) 48, 57, 521, 565, 1116
CviQI GTAC 3 cut(s) 143, 807, 1014
DdeI CTNAG 3 cut(s) 114, 129, 330
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraIII CACNNNGTG 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 1065
EarI CTCTTC 1 cut(s) 1065
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 53, 486, 847
Eco57I CTGAAG 1 cut(s) 1086
Eco88I CYCGRG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 590, 778
EcoRV GATATC 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 963
FaeI CATG 5 cut(s) 51, 60, 524, 568, 1119
FaqI GGGAC 1 cut(s) 285
FatI CATG 5 cut(s) 47, 56, 520, 564, 1115
FauI CCCGC 1 cut(s) 250
FokI GGATG 2 cut(s) 537, 914
FspBI CTAG 6 cut(s) 203, 294, 612, 758, 828, 981
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 3 cut(s) 650, 741, 832
HgaI GACGC 1 cut(s) 973
Hin1II CATG 5 cut(s) 51, 60, 524, 568, 1119
HindIII AAGCTT 2 cut(s) 365, 621
HinfI GANTC 6 cut(s) 219, 431, 443, 452, 812, 977
HphI GGTGA 2 cut(s) 916, 1114
Hpy166II GTNNAC 1 cut(s) 1016
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 4 cut(s) 479, 612, 911, 967
Hpy8I GTNNAC 1 cut(s) 1016
HpyAV CCTTC 2 cut(s) 403, 884
HpyCH4III ACNGT 4 cut(s) 390, 486, 584, 806
HpyCH4V TGCA 6 cut(s) 47, 181, 356, 380, 470, 961
HpyF3I CTNAG 3 cut(s) 114, 129, 330
Hsp92II CATG 5 cut(s) 51, 60, 524, 568, 1119
Kzo9I GATC 1 cut(s) 20
LweI GCATC 4 cut(s) 96, 389, 393, 604
MaeI CTAG 6 cut(s) 203, 294, 612, 758, 828, 981
MaeIII GTNAC 1 cut(s) 1102
MalI GATC 1 cut(s) 22
MbiI CCGCTC 1 cut(s) 424
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 869, 1079, 1082
MluCI AATT 6 cut(s) 41, 194, 276, 547, 664, 936
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 112, 843
Mph1103I ATGCAT 1 cut(s) 963
MseI TTAA 3 cut(s) 135, 209, 717
MslI CAYNNNNRTG 1 cut(s) 1114
MspA1I CMGCKG 1 cut(s) 245
MspCI CTTAAG 1 cut(s) 716
MspR9I CCNGG 2 cut(s) 592, 780
MvaI CCWGG 2 cut(s) 592, 780
NdeII GATC 1 cut(s) 20
NlaIII CATG 5 cut(s) 51, 60, 524, 568, 1119
NlaIV GGNNCC 1 cut(s) 765
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 1102
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 1 cut(s) 51
NspV TTCGAA 1 cut(s) 933
PfeI GAWTC 5 cut(s) 431, 443, 452, 812, 977
PflFI GACNNNGTC 1 cut(s) 295
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 590, 778
PspGI CCWGG 2 cut(s) 590, 778
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 4 cut(s) 53, 486, 648, 847
PsyI GACNNNGTC 1 cut(s) 295
RsaI GTAC 3 cut(s) 144, 808, 1015
RsaNI GTAC 3 cut(s) 143, 807, 1014
RseI CAYNNNNRTG 1 cut(s) 1114
SaqAI TTAA 3 cut(s) 135, 209, 717
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 4 cut(s) 53, 486, 648, 847
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 592, 780
SfaNI GCATC 4 cut(s) 96, 389, 393, 604
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 3 cut(s) 53, 486, 847
SmiMI CAYNNNNRTG 1 cut(s) 1114
SmlI CTYRAG 2 cut(s) 716, 909
SmoI CTYRAG 2 cut(s) 716, 909
Sse9I AATT 6 cut(s) 41, 194, 276, 547, 664, 936
SsiI CCGC 3 cut(s) 243, 424, 800
SspMI CTAG 6 cut(s) 203, 294, 612, 758, 828, 981
StyD4I CCNGG 2 cut(s) 590, 778
TaaI ACNGT 4 cut(s) 390, 486, 584, 806
TaqI TCGA 4 cut(s) 312, 553, 640, 933
TasI AATT 6 cut(s) 41, 194, 276, 547, 664, 936
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 5 cut(s) 431, 443, 452, 812, 977
Tru1I TTAA 3 cut(s) 135, 209, 717
Tru9I TTAA 3 cut(s) 135, 209, 717
TscAI CASTG 2 cut(s) 395, 898
TseFI GTSAC 1 cut(s) 1102
Tsp45I GTSAC 1 cut(s) 1102
TspDTI ATGAA 6 cut(s) 90, 330, 553, 563, 737, 966
TspGWI ACGGA 2 cut(s) 375, 824
TspRI CASTG 2 cut(s) 395, 898
Tth111I GACNNNGTC 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 3 cut(s) 53, 486, 847
XapI RAATTY 2 cut(s) 41, 276
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 1 cut(s) 51
XspI CTAG 6 cut(s) 203, 294, 612, 758, 828, 981
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.