Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

37219658 .. 37220096

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGACACGCTGATCTTCTGCTTCCCTATGGTTGCAATTTGATACTGCTGCTTATAAAAGCCATAATATACGTGCATGAGAACGGTCTTTATCACAAGGGTTTAGACCAAACCAAAAACTACGTTGTTTTATCAGGCAAAGTCAAAATTATCAACATCGGCATGCACAGTTTGAAGGACGTTCCGGCGCCAGGAGATGACACCCTGAGGATGAATGACTTTATGGCATTGAAAGACTTGTTAAAGATTCACATATTGCAGCCCGGGGTGGATTGGAGTGAACGAGATCTGTTCCTTTCTTTCTTTTATATTAGAACATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.43

Weight (kDa)

7.9

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	175, 232
AjnI	CCWGG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	49, 259
AspLEI	GCGC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	264, 265
AvaI	CYCGRG	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	36, 271
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	264, 265
BfoI	RGCGCY	1 cut(s)	191
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	2 cut(s)	50, 260
BlsI	GCNGC	2 cut(s)	51, 261
Bme1390I	CCNGG	3 cut(s)	192, 264, 265
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	3 cut(s)	192, 264, 265
BpuMI	CCSGG	2 cut(s)	264, 265
BsaAI	YACGTR	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	263, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	263, 264
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	36, 271
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	185, 264
BslI	CCNNNNNNNGG	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	13, 286
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	263, 264
BssMI	GATC	2 cut(s)	13, 286
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	86, 170
BstACI	GRCGYC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	16, 289
BstMBI	GATC	2 cut(s)	13, 286
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	190, 262, 263
BstV1I	GCAGC	2 cut(s)	36, 271
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	263
CviAII	CATG	2 cut(s)	77, 163
CviJI	RGCY	2 cut(s)	62, 262
CviKI_1	RGCY	2 cut(s)	62, 262
DdeI	CTNAG	1 cut(s)	206
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	2 cut(s)	15, 288
DpnII	GATC	2 cut(s)	13, 286
Eco81I	CCTNAGG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
FaeI	CATG	2 cut(s)	80, 166
FatI	CATG	2 cut(s)	76, 162
Fnu4HI	GCNGC	2 cut(s)	50, 260
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	50, 260
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	50, 260
HaeII	RGCGCY	1 cut(s)	191
HapII	CCGG	2 cut(s)	185, 264
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	80, 166
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	185, 264
Hpy166II	GTNNAC	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	86, 170
HpyCH4IV	ACGT	3 cut(s)	72, 123, 180
HpyCH4V	TGCA	4 cut(s)	36, 76, 166, 259
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	3 cut(s)	72, 123, 180
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	80, 166
HspAI	GCGC	1 cut(s)	188
KasI	GGCGCC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	13, 286
LpnPI	CCDG	6 cut(s)	120, 177, 198, 204, 218, 277
Lsp1109I	GCAGC	2 cut(s)	36, 271
MaeII	ACGT	3 cut(s)	72, 123, 180
MalI	GATC	2 cut(s)	15, 288
MboI	GATC	2 cut(s)	13, 286
MboII	GAAGA	1 cut(s)	8
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	2 cut(s)	37, 147
Mly113I	GGCGCC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	2 cut(s)	161, 322
MspI	CCGG	2 cut(s)	185, 264
MspR9I	CCNGG	3 cut(s)	192, 264, 265
MvaI	CCWGG	1 cut(s)	192
NarI	GGCGCC	1 cut(s)	188
NciI	CCSGG	2 cut(s)	264, 265
NdeII	GATC	2 cut(s)	13, 286
NlaIII	CATG	2 cut(s)	80, 166
NlaIV	GGNNCC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	51, 261
PluTI	GGCGCC	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	161, 322
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	50, 260
Sau3AI	GATC	2 cut(s)	13, 286
ScrFI	CCNGG	3 cut(s)	192, 264, 265
SetI	ASST	3 cut(s)	75, 126, 183
SfoI	GGCGCC	1 cut(s)	189
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	161, 322
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	37, 147
SspDI	GGCGCC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	190, 262, 263
TaaI	ACNGT	2 cut(s)	86, 170
TaiI	ACGT	3 cut(s)	75, 126, 183
TasI	AATT	2 cut(s)	37, 147
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseI	GCWGC	2 cut(s)	49, 259
TspDTI	ATGAA	1 cut(s)	227
TspMI	CCCGGG	1 cut(s)	263
XceI	RCATGY	1 cut(s)	166
XmaI	CCCGGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.