MD17G1269700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001767
Physical Location & Seq
Forward (+)
32964952 .. 32965987
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1269700.v1.1.491

Sequence Viewer

Length: 144 bp
ATGTGGCTCATGTGCTACGATCGTTTCGACTGCTATCTGAGACCTTCGTTAAACCGGAAAAATAATGCTACTAAAGTAGTGCCACTAGAACAGAGTAGTGATGATCTCAATCCATGGTGGTGCAATTTTATACAACGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

48

Amino Acids

5.82

Weight (kDa)

7.71

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw26I GTCTC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 108
BseMII CTCAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 19, 103
Bsp19I CCATGG 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 19, 103
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 2 cut(s) 22, 106
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 19, 103
BstMCI CGRYCG 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 113
CviAII CATG 2 cut(s) 10, 114
CviJI RGCY 1 cut(s) 7
CviKI_1 RGCY 1 cut(s) 7
DdeI CTNAG 1 cut(s) 38
DpnI GATC 2 cut(s) 21, 105
DpnII GATC 2 cut(s) 19, 103
Eco130I CCWWGG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 13, 117
FaiI YATR 3 cut(s) 11, 115, 131
FatI CATG 2 cut(s) 9, 113
FspBI CTAG 1 cut(s) 86
FspEI CC 8 cut(s) 40, 57, 68, 96, 100, 103, 121, 126
HapII CCGG 1 cut(s) 55
Hin1II CATG 2 cut(s) 13, 117
HpaII CCGG 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 2 cut(s) 13, 117
Kzo9I GATC 2 cut(s) 19, 103
LpnPI CCDG 1 cut(s) 68
MaeI CTAG 1 cut(s) 86
MalI GATC 2 cut(s) 21, 105
MboI GATC 2 cut(s) 19, 103
MluCI AATT 1 cut(s) 124
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 118
MspI CCGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 113
NdeII GATC 2 cut(s) 19, 103
NlaIII CATG 2 cut(s) 13, 117
PcsI WCGNNNNNNNCGW 1 cut(s) 24
Ple19I CGATCG 1 cut(s) 22
PvuI CGATCG 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 2 cut(s) 19, 103
SetI ASST 1 cut(s) 46
SgeI CNNG 4 cut(s) 22, 67, 98, 126
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 124
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.