Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

67939071 .. 67939468

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGAAACAAGAAGCATTTAAGCCGCGCTACTCGGGTTGGGATACTAAGATGGGACCTGATTTGAGAAGTGTCTTTGAGCACGAGGATGATAAGGGTAGAGTTAGATGTTATAATGGTCAAAGCGCATTGGACCTCCTTGAATTAATAAGAAATGCAAATCGACATCCTGGGCAAAGCACGATGGAACGCCTTGACAAAGAAGTCAGAAAGGATTATTCTGGTTTCTTTCGTCGCCTTCATGAGGTGGTATGCAGACTCGAGGGGCCTGGCCCTGAGCCTAAGGATGAGGGGAATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.78

Weight (kDa)

5.94

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AasI	GACNNNNNNGTC	1 cut(s)	203
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	7, 143
AjnI	CCWGG	2 cut(s)	169, 268
Alw21I	GWGCWC	1 cut(s)	84
Ama87I	CYCGRG	2 cut(s)	34, 260
AoxI	GGCC	2 cut(s)	266, 271
AseI	ATTAAT	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	30, 128
AspS9I	GGNCC	4 cut(s)	56, 133, 266, 272
AvaI	CYCGRG	2 cut(s)	34, 260
AvaII	GGWCC	2 cut(s)	56, 133
AxyI	CCTNAGG	1 cut(s)	282
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	2 cut(s)	46, 178
BciT130I	CCWGG	2 cut(s)	171, 270
BciVI	GTATCC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	171, 270
Bme18I	GGWCC	2 cut(s)	56, 133
BmeT110I	CYCGRG	2 cut(s)	34, 260
BmgT120I	GGNCC	4 cut(s)	56, 133, 266, 272
BmiI	GGNNCC	2 cut(s)	57, 267
BmrFI	CCNGG	2 cut(s)	171, 270
Bpu10I	CCTNAGC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	171, 270
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	94, 166, 292
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	268, 273
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	2 cut(s)	34, 260
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	268, 273
BsoBI	CYCGRG	2 cut(s)	34, 260
Bsp1286I	GDGCHC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	268, 273
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	57, 267
BssECI	CCNNGG	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	171, 270
BstDEI	CTNAG	3 cut(s)	48, 276, 282
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	94, 166, 292
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	30, 128
BstNI	CCWGG	2 cut(s)	171, 270
BstSCI	CCNGG	2 cut(s)	169, 268
BstUI	CGCG	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	268, 273
BtsCI	GGATG	3 cut(s)	94, 166, 292
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	2 cut(s)	30, 128
Cfr13I	GGNCC	4 cut(s)	56, 133, 266, 272
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	4 cut(s)	25, 268, 273, 280
CviKI_1	RGCY	4 cut(s)	25, 268, 273, 280
DdeI	CTNAG	3 cut(s)	48, 276, 282
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	56, 133
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	34, 260
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	56, 266
EcoRII	CCWGG	2 cut(s)	169, 268
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	114, 243, 253
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	3 cut(s)	101, 153, 299
Fsp4HI	GCNGC	1 cut(s)	26
GlaI	GCGC	2 cut(s)	29, 127
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	268, 273
HhaI	GCGC	2 cut(s)	30, 128
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	2 cut(s)	28, 126
HinP1I	GCGC	2 cut(s)	28, 126
HinfI	GANTC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	158, 255
HpyF3I	CTNAG	3 cut(s)	48, 276, 282
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	2 cut(s)	28, 126
LpnPI	CCDG	7 cut(s)	72, 156, 183, 207, 255, 282, 288
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	79, 146, 238, 256, 283
MseI	TTAA	2 cut(s)	21, 146
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	171, 270
MvaI	CCWGG	2 cut(s)	171, 270
MvnI	CGCG	1 cut(s)	28
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	57, 267
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	169, 268
PspGI	CCWGG	2 cut(s)	169, 268
PspN4I	GGNNCC	2 cut(s)	57, 267
PspPI	GGNCC	4 cut(s)	56, 133, 266, 272
PspPPI	RGGWCCY	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	21, 146
SatI	GCNGC	1 cut(s)	26
Sau96I	GGNCC	4 cut(s)	56, 133, 266, 272
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	171, 270
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	3 cut(s)	61, 138, 249
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	56, 133
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	169, 268
TaqI	TCGA	2 cut(s)	163, 261
TasI	AATT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	21, 146
Tru9I	TTAA	2 cut(s)	21, 146
TspDTI	ATGAA	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	56, 133
VspI	ATTAAT	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.