Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

18222442 .. 18224556

Gene Structure 2115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAAAGCAACAAGCTTCAGTTGATGGAATACAAAAGGAACATAAACATAAACTCAACCCCGACAAGGATTTGTTGGTGAAAAGAGGTAGAATTATCATACAATACGAGTTTGATTATGACCCATCTCGGATCTACTCTACCGGAAAAATCTACTTCAAAAATGGCAAAGAAGAAGAGGCTCGATTTTTTAAATACGAGAAATCGGAAGAGGACTTAGCAAAGAAGATATTTACCCTGACTTCCAAGTTGGCTTCCAAGTTAGGAGATTACGAACCTCTGCATGTCTTGAAACCTCACTTCCTCACCTATTATGAACCACAAAATATTTGGATTTTGTGCTACGAAAAATTCGATCATCTTCTAAGTGAAATAAAGATGGATGTTGAGGATTCTGTAGATGGACCTCGTATTCTATCTTTTTGGTGGCGTGATTCGATTCGGGACGTTTTACGAACAATAAAATATATACATTCTCATAATATGTTTCATAATGGTTTGAATGAAACGTACAATTATGCTGTTGTTTCCGGTCAAATCAAGATTATTAACGTCCGCAGTAATGTTAAAGACCTCGAAGATCCTGTACATCCATCAGAATTACAGGCGTTGAGAATTAAGGACTTAATAGCATTTAGGAACATGTTAAAGGAGAAAATAATGTTGCCAAAAGTCCCATGGGCTGATCGTGATTATTTCTTTGCTTTCTTTGACAAAGAAGAAGAATTGTACCCTATATTTGTCGAGAAACTAGCAAGCCATCCATTTTTATTGACTCCGGCGGAAAGAATGGAGTGTTTTTCCAATATACGGAAATCCGCTTTTGCAAGCAATAATTTCAAGAGAATTTTAAACGGTAGAACATTCCTTAAGTATAGGAACTGGAATAGGGAAGATATGGCTCGTGAGTTCCAAAAGGTTTATAAACGTTCCAATTCGAAATATAACTGTGAATGTGTCTGGGATCTTCTAGAATTTTTGAGAGATATATATCTCGATCTACCTTGTAATATGAAAGCTGTGGACGCTGAGGTCAAAAGATTGTACCCTAATTTCTTGAATGAGATATTTGCCATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

361

Amino Acids

43.12

Weight (kDa)

8.07

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AasI	GACNNNNNNGTC	1 cut(s)	1031
AciI	CCGC	3 cut(s)	556, 782, 819
AclI	AACGTT	1 cut(s)	928
AclWI	GGATC	3 cut(s)	140, 575, 972
AcsI	RAATTY	3 cut(s)	350, 846, 974
AfaI	GTAC	4 cut(s)	512, 588, 731, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	67, 810
AflII	CTTAAG	1 cut(s)	869
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	5 cut(s)	160, 292, 502, 841, 1060
AluBI	AGCT	2 cut(s)	17, 1019
AluI	AGCT	2 cut(s)	17, 1019
AlwI	GGATC	3 cut(s)	140, 575, 972
ApoI	RAATTY	3 cut(s)	350, 846, 974
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	91, 298
AsuII	TTCGAA	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BauI	CACGAG	1 cut(s)	903
BbvCI	CCTCAGC	1 cut(s)	1029
BccI	CCATC	7 cut(s)	20, 133, 373, 395, 601, 768, 1082
BfaI	CTAG	2 cut(s)	752, 971
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	869
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	1029
Bpu14I	TTCGAA	1 cut(s)	938
BsaBI	GATNNNNATC	1 cut(s)	990
BsaJI	CCNNGG	1 cut(s)	677
BsaWI	WCCGGW	2 cut(s)	143, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 810
Bse1I	ACTGG	1 cut(s)	887
Bse8I	GATNNNNATC	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	3 cut(s)	388, 589, 760
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	2 cut(s)	67, 810
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	1 cut(s)	887
BsiSI	CCGG	3 cut(s)	144, 531, 779
BslFI	GGGAC	2 cut(s)	458, 659
BslI	CCNNNNNNNGG	2 cut(s)	67, 810
BsmFI	GGGAC	2 cut(s)	458, 659
Bsp119I	TTCGAA	1 cut(s)	938
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	3 cut(s)	556, 782, 819
BspCNI	CTCAG	1 cut(s)	1021
BspPI	GGATC	3 cut(s)	140, 575, 972
BspT104I	TTCGAA	1 cut(s)	938
BspTI	CTTAAG	1 cut(s)	869
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	887
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	857, 950
Bst6I	CTCTTC	2 cut(s)	171, 204
BstAFI	CTTAAG	1 cut(s)	869
BstAUI	TGTACA	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	938
BstC8I	GCNNGC	2 cut(s)	757, 829
BstDEI	CTNAG	3 cut(s)	217, 365, 1029
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	388, 589, 760
BstKTI	GATC	6 cut(s)	135, 358, 583, 688, 967, 1000
BstMBI	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	1025
BstNSI	RCATGY	2 cut(s)	287, 646
BstSFI	CTRYAG	1 cut(s)	396
BstX2I	RGATCY	3 cut(s)	132, 580, 964
BstYI	RGATCY	3 cut(s)	132, 580, 964
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	3 cut(s)	388, 589, 760
Cac8I	GCNNGC	2 cut(s)	757, 829
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	1034
Csp6I	GTAC	4 cut(s)	511, 587, 730, 1045
CviAII	CATG	3 cut(s)	284, 643, 678
CviJI	RGCY	7 cut(s)	17, 182, 254, 683, 759, 902, 1019
CviKI_1	RGCY	7 cut(s)	17, 182, 254, 683, 759, 902, 1019
CviQI	GTAC	4 cut(s)	511, 587, 730, 1045
DdeI	CTNAG	3 cut(s)	217, 365, 1029
DpnI	GATC	6 cut(s)	134, 357, 582, 687, 966, 999
DpnII	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
DraI	TTTAAA	2 cut(s)	193, 852
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
Eam1104I	CTCTTC	2 cut(s)	171, 204
EarI	CTCTTC	2 cut(s)	171, 204
EciI	GGCGGA	1 cut(s)	797
Eco130I	CCWWGG	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	677
FaeI	CATG	3 cut(s)	287, 646, 681
FaqI	GGGAC	2 cut(s)	458, 659
FatI	CATG	3 cut(s)	283, 642, 677
FokI	GGATG	3 cut(s)	395, 576, 747
FspBI	CTAG	2 cut(s)	752, 971
HapII	CCGG	3 cut(s)	144, 531, 779
HgaI	GACGC	1 cut(s)	1034
Hin1II	CATG	3 cut(s)	287, 646, 681
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	4 cut(s)	392, 434, 439, 775
HpaII	CCGG	3 cut(s)	144, 531, 779
HphI	GGTGA	2 cut(s)	91, 298
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	3 cut(s)	132, 208, 598
Hpy8I	GTNNAC	1 cut(s)	1024
HpyCH4III	ACNGT	2 cut(s)	857, 950
HpyCH4IV	ACGT	4 cut(s)	447, 509, 552, 928
HpyCH4V	TGCA	2 cut(s)	283, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1025
HpyF3I	CTNAG	3 cut(s)	217, 365, 1029
HpySE526I	ACGT	4 cut(s)	447, 509, 552, 928
Hsp92II	CATG	3 cut(s)	287, 646, 681
Kzo9I	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
LpnPI	CCDG	8 cut(s)	157, 251, 544, 590, 597, 792, 868, 946
MaeI	CTAG	2 cut(s)	752, 971
MaeII	ACGT	4 cut(s)	447, 509, 552, 928
MalI	GATC	6 cut(s)	134, 357, 582, 687, 966, 999
MboI	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
MflI	RGATCY	3 cut(s)	132, 580, 964
MlyI	GAGTC	1 cut(s)	769
MseI	TTAA	8 cut(s)	192, 549, 567, 618, 626, 647, 851, 870
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	3 cut(s)	144, 531, 779
MwoI	GCNNNNNNNGC	1 cut(s)	1025
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
NlaIII	CATG	3 cut(s)	287, 646, 681
NspI	RCATGY	2 cut(s)	287, 646
NspV	TTCGAA	1 cut(s)	938
PciI	ACATGT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	392, 434, 439
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
PscI	ACATGT	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	928
PspPI	GGNCC	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	132, 580, 964
RsaI	GTAC	4 cut(s)	512, 588, 731, 1046
RsaNI	GTAC	4 cut(s)	511, 587, 730, 1045
SaqAI	TTAA	8 cut(s)	192, 549, 567, 618, 626, 647, 851, 870
Sau3AI	GATC	6 cut(s)	132, 355, 580, 685, 964, 997
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	938
SinI	GGWCC	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
SsiI	CCGC	3 cut(s)	556, 782, 819
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	752, 971
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	2 cut(s)	857, 950
TaiI	ACGT	4 cut(s)	450, 512, 555, 931
TaqI	TCGA	8 cut(s)	184, 354, 437, 576, 744, 938, 996, 1077
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	3 cut(s)	392, 434, 439
Tru1I	TTAA	8 cut(s)	192, 549, 567, 618, 626, 647, 851, 870
Tru9I	TTAA	8 cut(s)	192, 549, 567, 618, 626, 647, 851, 870
TspDTI	ATGAA	4 cut(s)	330, 479, 519, 1028
TspGWI	ACGGA	1 cut(s)	826
Vha464I	CTTAAG	1 cut(s)	869
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	350, 846, 974
XbaI	TCTAGA	1 cut(s)	970
XceI	RCATGY	2 cut(s)	287, 646
XcmI	CCANNNNNNNNNTGG	2 cut(s)	327, 675
XspI	CTAG	2 cut(s)	752, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.