Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

38555613 .. 38558985

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAATTCAATAGTGTTAAAGGTGCATATGATTTGCCTCACATGGTAATCAAGACACAAATCAGCAAACTATTGAATTCTGTGAATAGCATTCACAACAACGGACTGCTTCATCTATCACTTTGTGATATTTCCAACTACGTTGTTATTAACAACAATTGGTATATTATTAATGTCGGTGGCACACTTAACCAACGCAATAGACAGCTAATGGTCACAAAGGACTTTGAAAGTTTTGGTAACATGCTTAAGACACATGTTCTCTTAGACACTTCATGGCGAGAAAGTAATGACTTCTTAAACACATTGGCAAATGTGTCTAATGCAAATGTTTGTCCTAACCGACTTGTCCAGATTCTATTAGACAATGCATTCTTCAAATCTTCATATGAACGACTTCAGACGTTTTCAGAAATTCATCATGGATGGGTGGACCGTCGTCGCAGTTGTAGGATGTTAAATAATGCCATTTCATCTGGAGCGTTTAACTGCTATATCACTAATGGAGGATGGGATCACGTTCCTATGAGCTATGTTTTGTCTCAAGTTTACTGGTATCAGAACAGCCCTGCCAACAACAAGTATGATGGACAGCAAATAACGAGCTTAATGAGGTTTTGCCGCAATGTGTTTGAACATTATCACCAATATAGGGGTAATGTAAATCTCATTGAGAATGAGATGAGACGATTATGGCCCGGATTTTTGGAAACACTACTTTATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

243

Amino Acids

28.46

Weight (kDa)

8.93

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	622
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	3 cut(s)	5, 76, 414
AcuI	CTGAAG	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	5 cut(s)	10, 76, 230, 379, 635
AluBI	AGCT	3 cut(s)	208, 531, 606
AluI	AGCT	3 cut(s)	208, 531, 606
Alw26I	GTCTC	2 cut(s)	546, 679
AlwI	GGATC	1 cut(s)	522
AoxI	GGCC	1 cut(s)	695
ApoI	RAATTY	3 cut(s)	5, 76, 414
AseI	ATTAAT	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	433, 696
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	433
BccI	CCATC	3 cut(s)	420, 504, 581
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	546, 679
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	433, 696
BmrFI	CCNGG	1 cut(s)	699
BoxI	GACNNNNGTC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	631
BseGI	GGATG	3 cut(s)	431, 459, 515
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	631
BseNI	ACTGG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	546, 679
BsmBI	CGTCTC	1 cut(s)	679
BsmI	GAATGC	2 cut(s)	90, 371
BsnI	GGCC	1 cut(s)	697
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	1 cut(s)	622
BspANI	GGCC	1 cut(s)	697
BspPI	GGATC	1 cut(s)	522
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	557
BssMI	GATC	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	265
BstF5I	GGATG	3 cut(s)	431, 459, 515
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	2 cut(s)	546, 679
BstMBI	GATC	1 cut(s)	514
BstNSI	RCATGY	2 cut(s)	247, 260
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	431, 459, 515
Cfr13I	GGNCC	2 cut(s)	433, 696
CviAII	CATG	5 cut(s)	43, 244, 257, 276, 422
CviJI	RGCY	5 cut(s)	208, 531, 567, 606, 697
CviKI_1	RGCY	5 cut(s)	208, 531, 567, 606, 697
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
DraIII	CACNNNGTG	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	5 cut(s)	46, 247, 260, 279, 425
FatI	CATG	5 cut(s)	42, 243, 256, 275, 421
FauNDI	CATATG	2 cut(s)	28, 388
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	3 cut(s)	438, 466, 522
Fsp4HI	GCNGC	1 cut(s)	622
GluI	GCNGC	1 cut(s)	622
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	699
Hin1II	CATG	5 cut(s)	46, 247, 260, 279, 425
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	433, 550
Hpy188I	TCNGA	3 cut(s)	402, 412, 561
Hpy188III	TCNNGA	3 cut(s)	52, 352, 477
Hpy8I	GTNNAC	2 cut(s)	433, 550
Hpy99I	CGWCG	2 cut(s)	441, 444
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	3 cut(s)	141, 404, 519
HpyCH4V	TGCA	3 cut(s)	26, 326, 371
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	3 cut(s)	141, 404, 519
Hsp92II	CATG	5 cut(s)	46, 247, 260, 279, 425
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	5 cut(s)	365, 462, 538, 582, 712
MaeII	ACGT	3 cut(s)	141, 404, 519
MaeIII	GTNAC	2 cut(s)	214, 239
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	2 cut(s)	367, 375
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	4 cut(s)	5, 76, 157, 414
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	48, 500, 606
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	9 cut(s)	18, 150, 171, 189, 249, 299, 458, 486, 608
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	2 cut(s)	90, 371
NciI	CCSGG	1 cut(s)	699
NdeI	CATATG	2 cut(s)	28, 388
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	5 cut(s)	46, 247, 260, 279, 425
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	2 cut(s)	247, 260
PciI	ACATGT	1 cut(s)	256
PctI	GAATGC	2 cut(s)	90, 371
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	623
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	438
PshBI	ATTAAT	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	433, 696
SaqAI	TTAA	9 cut(s)	18, 150, 171, 189, 249, 299, 458, 486, 608
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	433, 696
ScrFI	CCNGG	1 cut(s)	699
SetI	ASST	8 cut(s)	25, 144, 210, 407, 522, 533, 608, 617
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	248, 543
SmoI	CTYRAG	2 cut(s)	248, 543
Sse9I	AATT	4 cut(s)	5, 76, 157, 414
SsiI	CCGC	1 cut(s)	622
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	3 cut(s)	144, 407, 522
TasI	AATT	4 cut(s)	5, 76, 157, 414
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	9 cut(s)	18, 150, 171, 189, 249, 299, 458, 486, 608
Tru9I	TTAA	9 cut(s)	18, 150, 171, 189, 249, 299, 458, 486, 608
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	7 cut(s)	17, 101, 264, 375, 405, 407, 462
TspGWI	ACGGA	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	433
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	3 cut(s)	5, 76, 414
XceI	RCATGY	2 cut(s)	247, 260
XmnI	GAANNNNTTC	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.