RLG00000026139

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001767
Physical Location & Seq
Reverse (-)
771943 .. 772558
616 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026139

Sequence Viewer

Length: 336 bp
ATGAGACACGCTGATCTTTTGCTTCCCTATGGTAGCAATTTGATACTGCTGCTTATAAAAGCCATAATATACGTGCATGAGCACGATCTTTATCACAAGGGTTTAGACCAAACCGAAAACTACGTTATCTTATTAGGCAAAGTGAAAATTATCAACATCGGCATGCACAGTTTGAAAGACCTTCCGGCCCCAGGAGATGACACCCTGAGGATGAATGACTTTATGGCATTGAAAGACTTGCTAAAGATTCACATATTGCAGCTCGGGGTGGATTGGAGTGAACGAGATCTGTTCCTTTCTTTCTTCGATTTGATGGCTGTAGCGGGGTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

5.55

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 175, 232
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 49, 259
AspS9I GGNCC 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 36, 271
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 50, 260
BlsI GCNGC 2 cut(s) 51, 261
Bme1390I CCNGG 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse21I CCTNAGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 36, 271
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 13, 85, 286
BspACI CCGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 3 cut(s) 13, 85, 286
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 3 cut(s) 16, 88, 289
BstMBI GATC 3 cut(s) 13, 85, 286
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 36, 271
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 2 cut(s) 77, 163
CviJI RGCY 4 cut(s) 62, 188, 262, 317
CviKI_1 RGCY 4 cut(s) 62, 188, 262, 317
DdeI CTNAG 1 cut(s) 206
DpnI GATC 3 cut(s) 15, 87, 288
DpnII GATC 3 cut(s) 13, 85, 286
Eco81I CCTNAGG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 80, 166
FaiI YATR 9 cut(s) 30, 56, 65, 70, 78, 164, 224, 254, 330
FatI CATG 2 cut(s) 76, 162
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 50, 260
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 50, 260
GluI GCNGC 2 cut(s) 50, 260
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 80, 166
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 72, 123
HpyCH4V TGCA 3 cut(s) 76, 166, 259
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 2 cut(s) 72, 123
Hsp92II CATG 2 cut(s) 80, 166
Kzo9I GATC 3 cut(s) 13, 85, 286
LpnPI CCDG 4 cut(s) 177, 198, 204, 218
Lsp1109I GCAGC 2 cut(s) 36, 271
MaeII ACGT 2 cut(s) 72, 123
MalI GATC 3 cut(s) 15, 87, 288
MboI GATC 3 cut(s) 13, 85, 286
MboII GAAGA 1 cut(s) 295
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 37, 147
MnlI CCTC 1 cut(s) 201
MseI TTAA 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
NdeII GATC 3 cut(s) 13, 85, 286
NlaIII CATG 2 cut(s) 80, 166
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 166
PaeI GCATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 51, 261
Ppu21I YACGTR 1 cut(s) 73
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 2 cut(s) 50, 260
Sau3AI GATC 3 cut(s) 13, 85, 286
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 75, 126, 183, 264
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 161
SphI GCATGC 1 cut(s) 166
Sse9I AATT 2 cut(s) 37, 147
SsiI CCGC 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 2 cut(s) 75, 126
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 37, 147
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseI GCWGC 2 cut(s) 49, 259
TspDTI ATGAA 1 cut(s) 227
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.