Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

8453194 .. 8456269

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1099500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAAATCCTCAACATCTTCTTTGTGAAAAAACTCCCCTTAAAATCAATGCACTGCAGAAAACCCTAGAAATTGCAATTCTGTTCTTCTTCATCTGTGTCCTTGTTTATCGTCTCCTATCTCTCAGGGACCATGGTTTTGTCTGGCTTCTTGCCTTCACATGTGAGTCTTGGTTTGCTTTCAATTGGGTTCTTACTCTTATCACCCAATGGACTCCTGTTGAATACAAAACATACCCTCACAACCTCTTGCAACAGGTTTCGGAGCTTCCTCCGGTGGACATGTTTGTGACAACAGCAGATGCAAAGCTAGAGCCACCTATCATTACTGTGAACACAGTGCTCTCTCTTCTAGCCGTTGATTATCCAACTCACAAGCTAGCTTGCTATGTATCAGATGACGGGTGTTCACCTCTCACTCTCTACTCTCTCGTTGAAGCCTCAAAATTTGCTAAGCTTTGGGTACCCTTTTGCAAAAAGTACCATGTTCAAGTTAGAGCACCATTTAGATACTTCTCTGACAATCCCATTTTGTCAAGTTATAGTCCATCAGGATTCCTTCAAGAATGGACAAAAATGAAGGATGAGTATGAAAAGCTCTGCCAAAAAATTGAAGATGCTGTCCAAAATTTGGCACCTCTGGATTTTTCTAGAGACAATGTGGATTTTGCTCACATAGACAGCAGGAACCATCCCACTATAATCAAGGTTCTTGTTTTTTGTTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

244

Amino Acids

28.22

Weight (kDa)

5.96

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	93 - 238	3.3e-37	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	463, 634
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcsI	RAATTY	2 cut(s)	446, 628
AfaI	GTAC	2 cut(s)	465, 482
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	2 cut(s)	161, 282
AgsI	TTSAA	6 cut(s)	184, 224, 437, 491, 563, 614
AluBI	AGCT	6 cut(s)	268, 310, 379, 383, 457, 598
AluI	AGCT	6 cut(s)	268, 310, 379, 383, 457, 598
Alw21I	GWGCWC	2 cut(s)	345, 502
Alw26I	GTCTC	2 cut(s)	119, 648
ApoI	RAATTY	2 cut(s)	446, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp718I	GGTACC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	196, 402
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	463, 634
Bbv12I	GWGCWC	2 cut(s)	345, 502
BccI	CCATC	2 cut(s)	556, 699
BceAI	ACGGC	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	119, 648
BfaI	CTAG	5 cut(s)	68, 311, 353, 380, 651
BfmI	CTRYAG	1 cut(s)	56
BlpI	GCTNAGC	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	4 cut(s)	131, 465, 636, 689
BmsI	GCATC	2 cut(s)	292, 607
BmtI	GCTAGC	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	589, 691
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	139
BshNI	GGYRCC	2 cut(s)	463, 634
BsiHKAI	GWGCWC	2 cut(s)	345, 502
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	119, 648
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	345, 502
Bsp1720I	GCTNAGC	1 cut(s)	453
Bsp19I	CCATGG	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	131, 465, 636, 689
BspMAI	CTGCAG	1 cut(s)	60
BspOI	GCTAGC	1 cut(s)	383
BspT107I	GGYRCC	2 cut(s)	463, 634
BssECI	CCNNGG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	331, 340
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	381, 385
BstDEI	CTNAG	2 cut(s)	125, 453
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	589, 691
BstMAI	GTCTC	2 cut(s)	119, 648
BstNSI	RCATGY	2 cut(s)	165, 286
BstSFI	CTRYAG	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	589, 691
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 345
Cac8I	GCNNGC	2 cut(s)	381, 385
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	464, 481
CviAII	CATG	4 cut(s)	134, 162, 283, 485
CviQI	GTAC	2 cut(s)	464, 481
DdeI	CTNAG	2 cut(s)	125, 453
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	137, 165, 286, 488
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	133, 161, 282, 484
FokI	GGATG	2 cut(s)	596, 678
FspBI	CTAG	5 cut(s)	68, 311, 353, 380, 651
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	4 cut(s)	137, 165, 286, 488
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	3 cut(s)	167, 214, 555
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	196, 402
Hpy166II	GTNNAC	3 cut(s)	280, 334, 410
Hpy188I	TCNGA	3 cut(s)	265, 397, 520
Hpy188III	TCNNGA	4 cut(s)	552, 563, 641, 651
Hpy8I	GTNNAC	3 cut(s)	280, 334, 410
HpyAV	CCTTC	3 cut(s)	166, 569, 574
HpyCH4III	ACNGT	2 cut(s)	331, 340
HpyCH4V	TGCA	6 cut(s)	53, 58, 77, 253, 305, 474
HpyF3I	CTNAG	2 cut(s)	125, 453
Hsp92II	CATG	4 cut(s)	137, 165, 286, 488
KpnI	GGTACC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	112, 130, 231, 242, 288, 537, 626, 670
LweI	GCATC	2 cut(s)	292, 607
MaeI	CTAG	5 cut(s)	68, 311, 353, 380, 651
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	5 cut(s)	11, 79, 82, 341, 626
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	345, 502
MluCI	AATT	6 cut(s)	72, 78, 184, 446, 609, 628
MlyI	GAGTC	2 cut(s)	176, 208
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	7 cut(s)	21, 249, 257, 282, 423, 451, 648
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	2 cut(s)	287, 329
MspI	CCGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	133
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	137, 165, 286, 488
NlaIV	GGNNCC	4 cut(s)	131, 465, 636, 689
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	165, 286
PciI	ACATGT	2 cut(s)	161, 282
PfeI	GAWTC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	631
PleI	GAGTC	2 cut(s)	175, 208
PpsI	GAGTC	2 cut(s)	175, 208
PscI	ACATGT	2 cut(s)	161, 282
PspN4I	GGNNCC	4 cut(s)	131, 465, 636, 689
PspPI	GGNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	60
RsaI	GTAC	2 cut(s)	465, 482
RsaNI	GTAC	2 cut(s)	464, 481
RseI	CAYNNNNRTG	2 cut(s)	287, 329
SaqAI	TTAA	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	176, 208
SduI	GDGCHC	2 cut(s)	345, 502
SfaNI	GCATC	2 cut(s)	292, 607
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	287, 329
Sse9I	AATT	6 cut(s)	72, 78, 184, 446, 609, 628
SspMI	CTAG	5 cut(s)	68, 311, 353, 380, 651
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	331, 340
TasI	AATT	6 cut(s)	72, 78, 184, 446, 609, 628
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	60, 345
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	82, 593, 606
TspRI	CASTG	2 cut(s)	60, 345
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	2 cut(s)	446, 628
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	2 cut(s)	165, 286
XspI	CTAG	5 cut(s)	68, 311, 353, 380, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.