Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004188.1

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

349 .. 759

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagtgcatggctttttggatttcttggtgtcatactcaaactcttgggcatatccgagacagtctttgaagtaacacggaaagaccaatctacttcaagcgatgaaggcactgaagatactgaagccggaaaattcacctttgaccagtccccagttttcgtacctcccacagcaatgttgtttatgcaattaacagcactggccaccgctttgttgcggcttcaaccacctgcccgtgatggggtgggatcaggctctttggagaccatgtgcagtgttttgttagtggtatgcttatggccatttttgaaaggtctgtttggatcaggaaagtatggaattcctctatctaccatatttaaatctgttggtcttgcactactcttctacaccttgtgcagatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

136

Amino Acids

14.77

Weight (kDa)

5.3

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AciI	CCGC	2 cut(s)	210, 220
AclWI	GGATC	2 cut(s)	259, 334
AcoI	YGGCCR	2 cut(s)	204, 302
AcsI	RAATTY	2 cut(s)	134, 342
AcuI	CTGAAG	2 cut(s)	135, 144
AdeI	CACNNNGTG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	243, 244
AgsI	TTSAA	4 cut(s)	71, 99, 227, 313
Alw26I	GTCTC	2 cut(s)	53, 260
AlwI	GGATC	2 cut(s)	259, 334
AoxI	GGCC	2 cut(s)	204, 302
ApoI	RAATTY	2 cut(s)	134, 342
AsuHPI	GGTGA	1 cut(s)	130
BalI	TGGCCA	2 cut(s)	206, 304
BccI	CCATC	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	53, 260
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 244
Bse1I	ACTGG	3 cut(s)	148, 155, 207
Bse3DI	GCAATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	243, 244
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	148, 155, 207
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	206, 304
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	243, 244
BsmAI	GTCTC	2 cut(s)	53, 260
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	206, 304
Bso31I	GGTCTC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	251, 326
BspACI	CCGC	2 cut(s)	210, 220
BspANI	GGCC	2 cut(s)	206, 304
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	259, 334
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	3 cut(s)	148, 155, 207
BssMI	GATC	2 cut(s)	251, 326
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	254, 329
BstMAI	GTCTC	2 cut(s)	53, 260
BstMBI	GATC	2 cut(s)	251, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	206, 304
BtgZI	GCGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	111, 200, 283
BveI	ACCTGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	2 cut(s)	9, 271
CviJI	RGCY	6 cut(s)	13, 128, 206, 223, 258, 304
CviKI_1	RGCY	6 cut(s)	13, 128, 206, 223, 258, 304
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	2 cut(s)	253, 328
DpnII	GATC	2 cut(s)	251, 326
DraI	TTTAAA	1 cut(s)	364
DraIII	CACNNNGTG	1 cut(s)	399
EaeI	YGGCCR	2 cut(s)	204, 302
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	135, 144
EcoRI	GAATTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	12, 274
FaiI	YATR	9 cut(s)	10, 35, 53, 188, 272, 295, 301, 339, 359
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	8, 270
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	206, 304
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	12, 274
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	330
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	8, 190, 276, 380, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	12, 274
Kzo9I	GATC	2 cut(s)	251, 326
LpnPI	CCDG	7 cut(s)	142, 161, 168, 188, 240, 246, 315
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	253, 328
MboI	GATC	2 cut(s)	251, 326
MboII	GAAGA	2 cut(s)	128, 379
MlsI	TGGCCA	2 cut(s)	206, 304
MluCI	AATT	3 cut(s)	134, 191, 342
MluNI	TGGCCA	2 cut(s)	206, 304
MnlI	CCTC	2 cut(s)	177, 357
Mox20I	TGGCCA	2 cut(s)	206, 304
MscI	TGGCCA	2 cut(s)	206, 304
MseI	TTAA	2 cut(s)	194, 363
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	2 cut(s)	206, 304
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	251, 326
NlaIII	CATG	2 cut(s)	12, 274
PaqCI	CACCTGC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	194, 363
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	251, 326
SetI	ASST	5 cut(s)	143, 169, 235, 319, 398
SmiI	ATTTAAAT	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	134, 191, 342
SsiI	CCGC	2 cut(s)	210, 220
SwaI	ATTTAAAT	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	64
TasI	AATT	3 cut(s)	134, 191, 342
TauI	GCSGC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	194, 363
Tru9I	TTAA	2 cut(s)	194, 363
TscAI	CASTG	3 cut(s)	118, 207, 283
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	3 cut(s)	118, 207, 283
XapI	RAATTY	2 cut(s)	134, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.