Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024429.1

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 890

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024429.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 574 bp

atggagtttataatcctcttcctcctcctttcactccttgtttatcgtctcctctctttcaacaaccatggtttatcctggtccatcgcattcctctgcgagctctggtttaccttcagttgggtcatcaccatgagcatcaaatggattcttgttgaccataaaccataccccgaccgcctattgcaacgggtgcctaaggatgagcttccagcagtagacttgtttgtgacaacagcagacccagagcttgaaccacctatcattaccgtaaacactgttctgtctctgttggcagttgattacccaacaaacaaactagcatgctatgtttctgatgatgggtgttcccctatcaccttctactcacttgtggaagcatcaaagtttgctaggatttggattcccttttgcaaaaagtacaatgttcaagttagagctccttttagatacttcaccaataattccacgctttctggaaataataataatagctcaatggaattcaagcatgaatggaagatagtgaaggatgaatatgagcaacttagcagcaaaatagaggatgcggtgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

191

Amino Acids

22.17

Weight (kDa)

5.38

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	2 cut(s)	178, 569
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	61, 254, 431, 508
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	5 cut(s)	103, 208, 250, 440, 495
AluI	AGCT	5 cut(s)	103, 208, 250, 440, 495
Alw21I	GWGCWC	2 cut(s)	105, 442
Alw26I	GTCTC	2 cut(s)	53, 291
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	3 cut(s)	121, 349, 448
AvaII	GGWCC	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	105, 442
Bbv12I	GWGCWC	2 cut(s)	105, 442
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	92, 335
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	53, 291
BfaI	CTAG	2 cut(s)	320, 393
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	147, 389, 556
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	208, 538, 571
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	14, 41
BseXI	GCAGC	1 cut(s)	564
Bsh1285I	CGRYCG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	105, 442
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	53, 291
BsmBI	CGTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	105, 442
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	178, 569
BspLI	GGNNCC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	271, 280
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	101, 325
BstDEI	CTNAG	2 cut(s)	198, 548
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	208, 538, 571
BstMAI	GTCTC	2 cut(s)	53, 291
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	208, 538, 571
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	101, 325
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	4 cut(s)	68, 133, 324, 512
CviJI	RGCY	5 cut(s)	103, 208, 250, 440, 495
CviKI_1	RGCY	5 cut(s)	103, 208, 250, 440, 495
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	198, 548
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	103, 440
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	105, 442
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	2 cut(s)	103, 440
Eco57I	CTGAAG	1 cut(s)	100
Eco81I	CCTNAGG	1 cut(s)	198
EcoICRI	GAGCTC	2 cut(s)	103, 440
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	2 cut(s)	105, 442
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	71, 136, 327, 515
FaiI	YATR	9 cut(s)	11, 69, 134, 162, 169, 325, 330, 513, 540
FatI	CATG	4 cut(s)	67, 132, 323, 511
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	2 cut(s)	215, 545
FriOI	GRGCYC	2 cut(s)	105, 442
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	2 cut(s)	320, 393
GluI	GCNGC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	71, 136, 327, 515
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	148, 403
HphI	GGTGA	3 cut(s)	121, 349, 448
Hpy166II	GTNNAC	4 cut(s)	111, 157, 220, 274
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	4 cut(s)	111, 157, 220, 274
HpyAV	CCTTC	3 cut(s)	124, 370, 523
HpyCH4III	ACNGT	2 cut(s)	271, 280
HpyCH4V	TGCA	2 cut(s)	187, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	198, 548
Hsp92II	CATG	4 cut(s)	71, 136, 327, 515
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	6 cut(s)	64, 91, 91, 225, 258, 462
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	3 cut(s)	147, 389, 556
MaeI	CTAG	2 cut(s)	320, 393
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	10, 532
MhlI	GDGCHC	2 cut(s)	105, 442
MluCI	AATT	2 cut(s)	463, 503
MnlI	CCTC	6 cut(s)	26, 32, 35, 62, 104, 556
MslI	CAYNNNNRTG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	67
NlaIII	CATG	4 cut(s)	71, 136, 327, 515
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	148, 403
PkrI	GCNGC	1 cut(s)	554
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	2 cut(s)	105, 442
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	81
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	2 cut(s)	105, 442
SatI	GCNGC	1 cut(s)	553
Sau96I	GGNCC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	105, 442
SetI	ASST	8 cut(s)	105, 116, 210, 252, 262, 362, 442, 497
SfaNI	GCATC	3 cut(s)	147, 389, 556
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	2 cut(s)	463, 503
SsiI	CCGC	2 cut(s)	178, 569
SspMI	CTAG	2 cut(s)	320, 393
SstI	GAGCTC	2 cut(s)	105, 442
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	271, 280
TasI	AATT	2 cut(s)	463, 503
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	148, 403
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	528, 549
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	320, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.