Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

12736888 .. 12738666

Gene Structure 1779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTATGGATCCACAACTGAAGATGTGCTCACTGGCCTTTCAATCCATAACAAAGGTTGGAGATCCTTTATTTATGCACCTAACCCACCAGCCTTTCTAGGATGTGCGCCTACCGGTGGGCCTGCTGCAATGACCCAACAAAAAAGGTGGGCCACCGGCCTGCTTGAAATCCTCCTCAGCAAAAACTGCCCCATATTTGGCACTCTCTTTTCAAACCTCCAGTTCAGGCAGTGCTTGGGCAACTTCTGGATCCTTTCATGGGGGCTACGCTCAGTTCCCGAGCTGTGCTATGCTGCTTTGCCAGCCTATAGTATCATCACCAACTCATACTTCTTGCCCAAGGGCCAAGAACCAGCTTACTATTTACCTATAGCTGTGTTTCTGATCTACAATATGTACACTTTATCAGAGTACCTAAGAACCAGTCTATCAATCCGAGCATGGTGGAATAACCAAAGAATGGGAAGAATAACCACAATGAGTGCATGGCTTTTTGGACTTCTTGCCTTCTTGGTGTCATACTCAAACTCTTGGGCATATCCGAGACAGTCTTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

186

Amino Acids

21.13

Weight (kDa)

9.48

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 169	3.3e-30	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	460
AclWI	GGATC	5 cut(s)	3, 16, 57, 244, 257
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	2 cut(s)	398, 413
AfiI	CCNNNNNNNGG	4 cut(s)	116, 197, 259, 460
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	42, 167, 213, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	3 cut(s)	283, 356, 374
AluI	AGCT	3 cut(s)	283, 356, 374
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	5 cut(s)	3, 16, 57, 244, 257
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	5 cut(s)	34, 119, 150, 157, 343
ApeKI	GCWGC	2 cut(s)	125, 293
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	3 cut(s)	119, 150, 343
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	278
BamHI	GGATCC	2 cut(s)	8, 249
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	112, 280
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	307, 369
BisI	GCNGC	2 cut(s)	126, 294
BlsI	GCNGC	2 cut(s)	127, 295
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	119, 150, 343
BmiI	GGNNCC	2 cut(s)	10, 251
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 197, 259, 460
Bse118I	RCCGGY	2 cut(s)	113, 155
Bse1I	ACTGG	3 cut(s)	37, 220, 423
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	4 cut(s)	116, 197, 259, 460
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	190, 285
BseNI	ACTGG	3 cut(s)	37, 220, 423
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	112, 280
BshFI	GGCC	5 cut(s)	36, 121, 152, 159, 345
BshTI	ACCGGT	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	114, 156
BslI	CCNNNNNNNGG	4 cut(s)	116, 197, 259, 460
BsmAI	GTCTC	1 cut(s)	538
BsnI	GGCC	5 cut(s)	36, 121, 152, 159, 345
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	8, 62, 249, 384
BspANI	GGCC	5 cut(s)	36, 121, 152, 159, 345
BspCNI	CTCAG	2 cut(s)	189, 284
BspLI	GGNNCC	2 cut(s)	10, 251
BspPI	GGATC	5 cut(s)	3, 16, 57, 244, 257
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	113, 155
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	37, 220, 423
BssAI	RCCGGY	2 cut(s)	113, 155
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	8, 62, 249, 384
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	3 cut(s)	123, 161, 303
BstDEI	CTNAG	3 cut(s)	176, 271, 416
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	11, 65, 252, 387
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	4 cut(s)	8, 62, 249, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 302
BstSFI	CTRYAG	2 cut(s)	307, 369
BstV1I	GCAGC	2 cut(s)	112, 280
BstX2I	RGATCY	3 cut(s)	8, 62, 249
BstYI	RGATCY	3 cut(s)	8, 62, 249
BsuRI	GGCC	5 cut(s)	36, 121, 152, 159, 345
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	30, 236
Cac8I	GCNNGC	3 cut(s)	123, 161, 303
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	113, 155
Cfr13I	GGNCC	3 cut(s)	119, 150, 343
Csp6I	GTAC	2 cut(s)	397, 412
CspAI	ACCGGT	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	3 cut(s)	258, 441, 486
CviQI	GTAC	2 cut(s)	397, 412
DdeI	CTNAG	3 cut(s)	176, 271, 416
DpnI	GATC	4 cut(s)	10, 64, 251, 386
DpnII	GATC	4 cut(s)	8, 62, 249, 384
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	3 cut(s)	261, 444, 489
FatI	CATG	3 cut(s)	257, 440, 485
Fnu4HI	GCNGC	2 cut(s)	126, 294
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	126, 294
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	126, 294
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	5 cut(s)	36, 121, 152, 159, 345
HapII	CCGG	2 cut(s)	114, 156
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	261, 444, 489
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	114, 156
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	384, 409, 437, 543
Hpy188III	TCNNGA	2 cut(s)	247, 278
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	77, 128, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 302
HpyF3I	CTNAG	3 cut(s)	176, 271, 416
Hsp92II	CATG	3 cut(s)	261, 444, 489
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	8, 62, 249, 384
Lsp1109I	GCAGC	2 cut(s)	112, 280
MaeI	CTAG	1 cut(s)	98
MalI	GATC	4 cut(s)	10, 64, 251, 386
MboI	GATC	4 cut(s)	8, 62, 249, 384
MboII	GAAGA	2 cut(s)	32, 477
MflI	RGATCY	3 cut(s)	8, 62, 249
MhlI	GDGCHC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	3 cut(s)	182, 185, 227
MspI	CCGG	2 cut(s)	114, 156
MwoI	GCNNNNNNNGC	2 cut(s)	186, 302
NdeII	GATC	4 cut(s)	8, 62, 249, 384
NlaIII	CATG	3 cut(s)	261, 444, 489
NlaIV	GGNNCC	2 cut(s)	10, 251
PflMI	CCANNNNNTGG	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	127, 295
PspN4I	GGNNCC	2 cut(s)	10, 251
PspPI	GGNCC	3 cut(s)	119, 150, 343
PsuI	RGATCY	3 cut(s)	8, 62, 249
RsaI	GTAC	2 cut(s)	398, 413
RsaNI	GTAC	2 cut(s)	397, 412
SatI	GCNGC	2 cut(s)	126, 294
Sau3AI	GATC	4 cut(s)	8, 62, 249, 384
Sau96I	GGNCC	3 cut(s)	119, 150, 343
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	9 cut(s)	58, 82, 149, 219, 285, 358, 370, 376, 417
SfcI	CTRYAG	2 cut(s)	307, 369
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	549
TatI	WGTACW	1 cut(s)	396
TscAI	CASTG	2 cut(s)	37, 236
TseI	GCWGC	2 cut(s)	125, 293
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	37, 236
Van91I	CCANNNNNTGG	1 cut(s)	460
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.