Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

11132737 .. 11141549

Gene Structure 8813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAAGAATGCGGCAGAGTGCTCTGGTTAATGATGGGGTGAGTTTAGAAAACCACAAGGATATGTCTGCTGGAGCAAAGGACAACTTCCAAAACCAGTTTTGGGCTGGAAACCAAGATAGTGGCAGCATCCATTCCTTTTATGATGTCGCTGCTAATCCAGATTCTGATGATGATCATAATGCCAAGGATGCTAATGCTGGCAAGTTCACTTTCGACGAGTCTCCAATGTTTGTACCACCTACGACCCTCTTGTTTGTGCACTTAACAACGTTGGCTATGAGATTGTTGGCAGTGAAATCACTATCAGCCCTACAAGGGACGACAGGAGTTGGGGAGATAGTGTGCTTTTGGCCATTTTTGAGACGACTGTTTGGGAAAGGTGAGTATGGAATTTCATTGTCCACTATACTCAAGTCGGGTGTGTTAGCTTTGCTTTTCACGCTATGCTGTGGAAAATTCTCATTGCCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

158

Amino Acids

17.25

Weight (kDa)

5.73

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AclI	AACGTT	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	393, 458
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	103, 318
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	2 cut(s)	25, 264
Alw26I	GTCTC	2 cut(s)	228, 358
Alw44I	GTGCAC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	126, 152
ApoI	RAATTY	2 cut(s)	393, 458
AsuHPI	GGTGA	2 cut(s)	52, 395
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	355
Bbv12I	GWGCWC	2 cut(s)	25, 264
BbvI	GCAGC	2 cut(s)	138, 139
BccI	CCATC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	228, 358
BisI	GCNGC	3 cut(s)	14, 127, 153
BlsI	GCNGC	3 cut(s)	15, 128, 154
BmsI	GCATC	2 cut(s)	138, 181
BpmI	CTGGAG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 318
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	129, 196
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	103, 318
BseMI	GCAATG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	138, 139
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	25, 264
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	103, 318
BsmAI	GTCTC	2 cut(s)	228, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	25, 264
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	129, 196
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	228, 358
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 442
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	138, 139
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	129, 196
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	5 cut(s)	107, 278, 311, 355, 431
CviKI_1	RGCY	5 cut(s)	107, 278, 311, 355, 431
CviQI	GTAC	1 cut(s)	236
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	358
FaiI	YATR	7 cut(s)	65, 144, 180, 281, 390, 410, 448
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	14, 127, 153
FokI	GGATG	2 cut(s)	116, 203
Fsp4HI	GCNGC	3 cut(s)	14, 127, 153
GluI	GCNGC	3 cut(s)	14, 127, 153
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	164, 221
HphI	GGTGA	2 cut(s)	52, 395
Hpy166II	GTNNAC	3 cut(s)	210, 262, 405
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	210, 262, 405
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 442
HpySE526I	ACGT	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	7 cut(s)	11, 57, 93, 110, 174, 186, 312
Lsp1109I	GCAGC	2 cut(s)	138, 139
LweI	GCATC	2 cut(s)	138, 181
MaeII	ACGT	1 cut(s)	272
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	25, 264
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	2 cut(s)	393, 458
MluNI	TGGCCA	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	1 cut(s)	260
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	2 cut(s)	30, 266
Msp20I	TGGCCA	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	191, 442
NdeII	GATC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	15, 128, 154
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp1406I	AACGTT	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	30, 266
SatI	GCNGC	3 cut(s)	14, 127, 153
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	25, 264
SetI	ASST	4 cut(s)	244, 275, 385, 433
SfaNI	GCATC	2 cut(s)	138, 181
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	393, 458
SsiI	CCGC	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	393, 458
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	30, 266
Tru9I	TTAA	2 cut(s)	30, 266
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	126, 152
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	393, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.